RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474911", tax_clade = "PVC group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA474911 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26696316 26696316 PRJNA474911_P_NODE_5281_length_247_cov_2.919355_g5154_i0 PRJNA474911 5281 247 2.919355 7.21080685 Phycisphaerales bacterium 2052180 Bacteria Bacteria 42.7 0.0242   NR MCC6427943.1 2052180 g5154 i0 47.5 0.48582995951417 40 20 48.6 1 81 200 125 163 MCC6427943.1 PepSY domain-containing protein [Phycisphaerales bacterium] diamond 120 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
27250381 27250381 PRJNA474911_P_NODE_2863_length_361_cov_1.440000_g2737_i0 PRJNA474911 2863 361 1.44 5.1984 PVC group 1783257 Bacteria Bacteria 63.2 3.17e-9   NR MCK4859712.1 2035772 g2737 i0 62.5 1.66204986149584 40 15 33.2 0 325 206 2 41 MCK4859712.1 adenylate kinase [Candidatus Omnitrophota bacterium] diamond 600 63.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27865802 27865802 PRJNA474911_P_NODE_7125_length_208_cov_1.312925_g6998_i0 PRJNA474911 7125 208 1.312925 2.730884 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 42.7 0.0244   NR MBQ6248075.1 2212473 g6998 i0 51.2 0.591346153846154 41 16 59.1 1 2 124 20 56 MBQ6248075.1 DEAD/DEAH box helicase family protein [Kiritimatiellia bacterium] diamond 123 42.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;