RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA474911" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA474911 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22774072 22774072 PRJNA474911_P_NODE_8318_length_201_cov_0.914286_g8191_i0 PRJNA474911 8318 201 0.914286 1.83771486 Singekia 3031157 Root_unresolved Root_unresolved 132 2.18e-26   NTclustered gi|2206682174|gb|OM966647.1| 2925341 g8191 i0 95.238 35.2985074626866 84 3 41 1 1 83 2755 2838 Singekia montserratensis strain MONTSE19P8 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7095 132 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia montserratensis
30424231 30424231 PRJNA474911_P_NODE_7293_length_207_cov_0.876712_g7166_i0 PRJNA474911 7293 207 0.876712 1.81479384 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 75.5 5.03e-14   NR XP_013761142.1 461836 g7166 i0 54.4 0.985507246376812 68 31 98.6 0 205 2 132 199 XP_013761142.1 pyoverdine biosynthesis regulatory [Thecamonas trahens ATCC 50062] diamond 204 75.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;