RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474911", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA474911 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5551286 5551286 PRJNA474911_P_NODE_6405_length_220_cov_1.207547_g6278_i0 PRJNA474911 6405 220 1.207547 2.6566034 Copromyxa protea 931554 Tubulinea other_Eukaryota 261 2.97e-65   NTclustered gi|508737347|dbj|AB766053.1| 931554 g6278 i0 89.048 4.65 210 23 95 0 1 210 432 223 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 1023 261 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8100721 8100721 PRJNA474911_P_NODE_7847_length_204_cov_0.895105_g7720_i0 PRJNA474911 7847 204 0.895105 1.8260142 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 235 1.65e-57   NTclustered gi|145386791|gb|EF216916.1| 136459 g7720 i0 89.785 80.0343137254902 186 16 90 3 5 188 1327 1511 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 16327 235 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
17024899 17024899 PRJNA474911_P_NODE_5574_length_239_cov_1.078652_g5447_i0 PRJNA474911 5574 239 1.078652 2.57797828 Copromyxa protea 931554 Tubulinea other_Eukaryota 315 2.48e-81   NTclustered gi|1042160913|dbj|LC102263.1| 931554 g5447 i0 90.377 91.6485355648536 239 23 100 0 1 239 449 211 Copromyxa protea gene for actin, partial cds, strain: LUM_cl4 blastn 21904 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;