RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA474911", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA474911 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722399 1722399 PRJNA474911_P_NODE_8062_length_202_cov_1.361702_g7935_i0 PRJNA474911 8062 202 1.361702 2.75063804 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 1.54e-97   NTclustered gi|300078498|gb|GU001160.1| 5755 g7935 i0 100 16.6435643564356 199 0 99 0 1 199 6756 6954 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3362 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8100720 8100720 PRJNA474911_P_NODE_7607_length_205_cov_0.888889_g7480_i0 PRJNA474911 7607 205 0.888889 1.82222245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 4.48e-78   NTclustered gi|470416173|ref|XM_004336808.1| 1257118 g7480 i0 93.659 1 205 10 100 1 1 205 307 106 Acanthamoeba castellanii str. Neff HMGL family domain containing protein (ACA1_130190), partial mRNA blastn 205 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14476199 14476199 PRJNA474911_P_NODE_8012_length_203_cov_0.901408_g7885_i0 PRJNA474911 8012 203 0.901408 1.82985824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 2.82e-35   NTclustered gi|470457305|ref|XM_004341077.1| 1257118 g7885 i0 93.578 0.812807881773399 109 6 81 1 96 203 296 404 Acanthamoeba castellanii str. Neff mitochondrial carnitineacylcarnitine carrier protein (ACA1_236290), partial mRNA blastn 165 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19573414 19573414 PRJNA474911_P_NODE_7296_length_207_cov_0.876712_g7169_i0 PRJNA474911 7296 207 0.876712 1.81479384 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 377 2.63e-100   NTclustered gi|470450828|ref|XM_004340382.1| 1257118 g7169 i0 99.517 76.43961352657 207 1 100 0 1 207 943 737 Acanthamoeba castellanii str. Neff elongation factor 1alpha, somatic form, putative (ACA1_138040), partial mRNA blastn 15823 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24048995 24048995 PRJNA474911_P_NODE_7359_length_207_cov_0.876712_g7232_i0 PRJNA474911 7359 207 0.876712 1.81479384 root 1 Root_unresolved Root_unresolved 381 2.0299999999999995e-101   NTclustered gi|909719646|gb|KT185626.1| 5755 g7232 i0 100 57.6183574879227 206 0 99 0 2 207 3749 3954 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11927 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24673737 24673737 PRJNA474911_P_NODE_5220_length_249_cov_2.037234_g5093_i0 PRJNA474911 5220 249 2.037234 5.07271266 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 401 1.9399999999999993e-107   NTclustered gi|300078498|gb|GU001160.1| 5755 g5093 i0 95.984 26.5381526104418 249 6 100 2 1 249 7799 7555 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6608 401 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;