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contig_metadata

11 rows where bioproject = "PRJNA474911" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA474911 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1722386 1722386 PRJNA474911_P_NODE_3822_length_302_cov_1.327801_g3695_i0 PRJNA474911 3822 302 1.327801 4.00995902 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.028   NTclustered gi|1160559030|ref|XM_020577619.1| 670386 g3695 i0 100 0.0927152317880795 28 0 9 0 236 263 514 541 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
1722399 1722399 PRJNA474911_P_NODE_8062_length_202_cov_1.361702_g7935_i0 PRJNA474911 8062 202 1.361702 2.75063804 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 1.54e-97   NTclustered gi|300078498|gb|GU001160.1| 5755 g7935 i0 100 16.6435643564356 199 0 99 0 1 199 6756 6954 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3362 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5551286 5551286 PRJNA474911_P_NODE_6405_length_220_cov_1.207547_g6278_i0 PRJNA474911 6405 220 1.207547 2.6566034 Copromyxa protea 931554 Tubulinea other_Eukaryota 261 2.97e-65   NTclustered gi|508737347|dbj|AB766053.1| 931554 g6278 i0 89.048 4.65 210 23 95 0 1 210 432 223 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 1023 261 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8100720 8100720 PRJNA474911_P_NODE_7607_length_205_cov_0.888889_g7480_i0 PRJNA474911 7607 205 0.888889 1.82222245 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 4.48e-78   NTclustered gi|470416173|ref|XM_004336808.1| 1257118 g7480 i0 93.659 1 205 10 100 1 1 205 307 106 Acanthamoeba castellanii str. Neff HMGL family domain containing protein (ACA1_130190), partial mRNA blastn 205 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8100721 8100721 PRJNA474911_P_NODE_7847_length_204_cov_0.895105_g7720_i0 PRJNA474911 7847 204 0.895105 1.8260142 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 235 1.65e-57   NTclustered gi|145386791|gb|EF216916.1| 136459 g7720 i0 89.785 80.0343137254902 186 16 90 3 5 188 1327 1511 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 16327 235 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
14476199 14476199 PRJNA474911_P_NODE_8012_length_203_cov_0.901408_g7885_i0 PRJNA474911 8012 203 0.901408 1.82985824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 2.82e-35   NTclustered gi|470457305|ref|XM_004341077.1| 1257118 g7885 i0 93.578 0.812807881773399 109 6 81 1 96 203 296 404 Acanthamoeba castellanii str. Neff mitochondrial carnitineacylcarnitine carrier protein (ACA1_236290), partial mRNA blastn 165 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17024897 17024897 PRJNA474911_P_NODE_3454_length_322_cov_1.164751_g3328_i0 PRJNA474911 3454 322 1.164751 3.75049822 Rhizomastix varia 1745347 Evosea other_Eukaryota 327 4.48e-85   NTclustered gi|944556463|gb|KP343611.1| 1745347 g3328 i0 85.22 99.3478260869565 318 47 99 0 5 322 696 379 Rhizomastix varia strain FBAN clone 2 actin gene, partial cds blastn 31990 327 1 Eukaryota Amoebozoa   Evosea       Rhizomastix Rhizomastix varia
17024899 17024899 PRJNA474911_P_NODE_5574_length_239_cov_1.078652_g5447_i0 PRJNA474911 5574 239 1.078652 2.57797828 Copromyxa protea 931554 Tubulinea other_Eukaryota 315 2.48e-81   NTclustered gi|1042160913|dbj|LC102263.1| 931554 g5447 i0 90.377 91.6485355648536 239 23 100 0 1 239 449 211 Copromyxa protea gene for actin, partial cds, strain: LUM_cl4 blastn 21904 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
19573414 19573414 PRJNA474911_P_NODE_7296_length_207_cov_0.876712_g7169_i0 PRJNA474911 7296 207 0.876712 1.81479384 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 377 2.63e-100   NTclustered gi|470450828|ref|XM_004340382.1| 1257118 g7169 i0 99.517 76.43961352657 207 1 100 0 1 207 943 737 Acanthamoeba castellanii str. Neff elongation factor 1alpha, somatic form, putative (ACA1_138040), partial mRNA blastn 15823 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24048995 24048995 PRJNA474911_P_NODE_7359_length_207_cov_0.876712_g7232_i0 PRJNA474911 7359 207 0.876712 1.81479384 root 1 Root_unresolved Root_unresolved 381 2.0299999999999995e-101   NTclustered gi|909719646|gb|KT185626.1| 5755 g7232 i0 100 57.6183574879227 206 0 99 0 2 207 3749 3954 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11927 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24673737 24673737 PRJNA474911_P_NODE_5220_length_249_cov_2.037234_g5093_i0 PRJNA474911 5220 249 2.037234 5.07271266 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 401 1.9399999999999993e-107   NTclustered gi|300078498|gb|GU001160.1| 5755 g5093 i0 95.984 26.5381526104418 249 6 100 2 1 249 7799 7555 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6608 401 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;