RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474426", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA474426 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28466018 28466018 PRJNA474426_P_NODE_7526_length_394_cov_1.333333_g7322_i0 PRJNA474426 7526 394 1.333333 5.25333202 Ignisphaera sp. 2268142 Archaea Archaea 158 5.139999999999999e-42   NR MCI4437813.1 2268142 g7322 i0 67.8 0.875634517766497 115 37 87.6 0 44 388 673 787 MCI4437813.1 phage tail sheath subtilisin-like domain-containing protein [Ignisphaera sp.] diamond 345 158 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.
28781400 28781400 PRJNA474426_P_NODE_6027_length_440_cov_4.774936_g5824_i0 PRJNA474426 6027 440 4.774936 21.0097184 Saccharolobus sp. 2100761 Archaea Archaea 48.9 5.91e-4   NR MEM4884130.1 2100761 g5824 i0 36.2 0.790909090909091 58 37 39.5 0 98 271 90 147 MEM4884130.1 helix-turn-helix domain-containing protein [Saccharolobus sp.] diamond 348 48.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus sp.
31782853 31782853 PRJNA474426_P_NODE_25457_length_193_cov_1.430556_g25252_i0 PRJNA474426 25457 193 1.430556 2.76097308 Ignisphaera sp. 2268142 Archaea Archaea 108 1.72e-25   NR MCI4437903.1 2268142 g25252 i0 95.8 0.746113989637306 48 2 74.6 0 22 165 296 343 MCI4437903.1 hypothetical protein [Ignisphaera sp.] diamond 144 108 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;