RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474426" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA474426 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28023912 28023912 PRJNA474426_P_NODE_34165_length_165_cov_0.896552_g33960_i0 PRJNA474426 34165 165 0.896552 1.4793108 Lobulomycetales sp. 2058121 Fungi Fungi 41.2 0.0464   NR KAL3898388.1 2058121 g33960 i0 44.9 0.890909090909091 49 27 89.1 0 19 165 26 74 KAL3898388.1 MAG: hypothetical protein SGCHY_002776 [Lobulomycetales sp.] diamond 147 41.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
29081957 29081957 PRJNA474426_P_NODE_13128_length_290_cov_1.116183_g12923_i0 PRJNA474426 13128 290 1.116183 3.2369307 Phlyctochytrium 4819 Fungi Fungi 53.5 1.03e-5   NR KAJ3107839.1 261098 g12923 i0 51 1.01379310344828 49 23 49.7 1 5 148 269 317 KAJ3107839.1 DnaJ sub C member 7 [Phlyctochytrium planicorne] diamond 294 53.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
29728538 29728538 PRJNA474426_P_NODE_10410_length_332_cov_2.575972_g10205_i0 PRJNA474426 10410 332 2.575972 8.55222704 Kappamyces sp. JEL 2040833 Fungi Fungi 60.8 4.66e-8   NR KAJ3358434.1 2724210 g10205 i0 44.2 0.69578313253012 77 39 69.6 1 296 66 369 441 KAJ3358434.1 Eukaryotic translation initiation factor 5A [Kappamyces sp. JEL0680] diamond 231 60.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0680

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;