RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA474426" and tax_phylum = "Candidatus Roizmaniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Roizmaniibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2998209 2998209 PRJNA474426_P_NODE_24143_length_199_cov_2.973333_g23938_i0 PRJNA474426 24143 199 2.973333 5.91693267 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 250 5.71e-62   NTclustered gi|1958015594|gb|CP064967.1| 2282149 g23938 i0 100 1.0251256281407 135 0 90 0 56 190 603512 603646 MAG: Candidatus Roizmanbacteria bacterium isolate Damh_18-Q3-R51-60_BAT3C.63_uni chromosome, complete genome blastn 204 250 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
27897382 27897382 PRJNA474426_P_NODE_21305_length_215_cov_2.343373_g21100_i0 PRJNA474426 21305 215 2.343373 5.03825195 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 99.4 3.0200000000000002e-22   NR MEI6327490.1 2282149 g21100 i0 83.1 0.823255813953488 59 10 82.3 0 37 213 376 434 MEI6327490.1 acetate--CoA ligase family protein [Candidatus Roizmanbacteria bacterium] diamond 177 99.4 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
31056034 31056034 PRJNA474426_P_NODE_22095_length_211_cov_1.265432_g21890_i0 PRJNA474426 22095 211 1.265432 2.67006152 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 58.9 4.7e-8   NR MEI6327441.1 2282149 g21890 i0 47.1 0.966824644549763 68 36 96.7 0 3 206 547 614 MEI6327441.1 DNRLRE domain-containing protein [Candidatus Roizmanbacteria bacterium] diamond 204 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
31688077 31688077 PRJNA474426_P_NODE_32257_length_168_cov_0.873950_g32052_i0 PRJNA474426 32257 168 0.87395 1.468236 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 97.4 1.02e-22   NR MBI4974199.1 2282149 g32052 i0 78.6 1 56 11 98.2 1 166 2 144 199 MBI4974199.1 M48 family metalloprotease [Candidatus Roizmanbacteria bacterium] diamond 168 97.4 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;