RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474426", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8100527 8100527 PRJNA474426_P_NODE_17587_length_242_cov_1.797927_g17382_i0 PRJNA474426 17587 242 1.797927 4.35098334 Chlorosarcinopsis eremi 332213 Plants Plants 414 2.41e-111   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g17382 i0 100 55.1115702479339 224 0 93 0 1 224 96438 96215 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 13337 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
29349991 29349991 PRJNA474426_P_NODE_11709_length_310_cov_3.390805_g11504_i0 PRJNA474426 11709 310 3.390805 10.5114955 Cymbomonas tetramitiformis 36881 Plants Plants 50.1 2.12e-4   NR KAK3246768.1 36881 g11504 i0 46.3 1.56774193548387 54 27 52.3 2 285 124 44 95 KAK3246768.1 hypothetical protein CYMTET_43707 [Cymbomonas tetramitiformis] diamond 486 50.1 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
31150057 31150057 PRJNA474426_P_NODE_5455_length_461_cov_3.735437_g5257_i0 PRJNA474426 5455 461 3.735437 17.22036457 Chlamydomonas eustigma 1157962 Plants Plants 104 9.22e-24   NR GAX80283.1 1157962 g5257 i0 58.4 1.14533622559653 89 37 57.9 0 301 35 54 142 GAX80283.1 hypothetical protein CEUSTIGMA_g7721.t1 [Chlamydomonas eustigma] diamond 528 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;