RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA474426" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 10 ✖

bioproject 1

  • PRJNA474426 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20849044 20849044 PRJNA474426_P_NODE_14077_length_278_cov_1.816594_g13872_i0 PRJNA474426 14077 278 1.816594 5.05013132 uncultured Candidatus Methanogranum sp. 2093355 Archaea Archaea 412 1.0199999999999999e-110   NTclustered gi|2621784480|emb|OY780938.1| 2093355 g13872 i0 93.502 1.99280575539568 277 18 99 0 1 277 1307016 1307292 MAG: uncultured Candidatus Methanogranum sp. isolate 9d90576e-3f35-4afd-8682-ecdb60e67c32 genome assembly, chromosome: 1 blastn 554 412 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanogranum uncultured Candidatus Methanogranum sp.
26854984 26854984 PRJNA474426_P_NODE_19981_length_224_cov_0.880000_g19776_i0 PRJNA474426 19981 224 0.88 1.9712 Methanosarcina sp. 2213 Archaea Archaea 87 6.81e-18   NR HET8687757.1 2213 g19776 i0 51.4 0.964285714285714 72 34 95.1 1 213 1 353 424 HET8687757.1 toprim domain-containing protein [Methanosarcina sp.] diamond 216 87 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28750034 28750034 PRJNA474426_P_NODE_17707_length_241_cov_2.166667_g17502_i0 PRJNA474426 17707 241 2.166667 5.22166747 Methanoculleus sp. 7T 2937282 Archaea Archaea 66.2 3.61e-11   NR WP_248535981.1 2937282 g17502 i0 47.6 1.0207468879668 82 38 95.9 1 241 11 43 124 WP_248535981.1 hypothetical protein [Methanoculleus sp. 7T] diamond 246 66.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp. 7T
28907622 28907622 PRJNA474426_P_NODE_12388_length_300_cov_1.569721_g12183_i0 PRJNA474426 12388 300 1.569721 4.709163 Methanogenium sp. 2196 Archaea Archaea 136 5.88e-39   NR MFA5395027.1 2196 g12183 i0 68.2 0.85 85 27 85 0 293 39 55 139 MFA5395027.1 hypothetical protein [Methanogenium sp.] diamond 255 136 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
29855198 29855198 PRJNA474426_P_NODE_5931_length_444_cov_4.362025_g5728_i0 PRJNA474426 5931 444 4.362025 19.367391 Methanobrevibacter sp. 66852 Archaea Archaea 66.2 9.74e-11   NR MBO7735300.1 66852 g5728 i0 51.7 0.391891891891892 58 27 38.5 1 12 182 64 121 MBO7735300.1 hypothetical protein [Methanobrevibacter sp.] diamond 174 66.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30424227 30424227 PRJNA474426_P_NODE_8313_length_375_cov_1.469325_g8108_i0 PRJNA474426 8313 375 1.469325 5.50996875 Methanosarcina sp. 2213 Archaea Archaea 60.1 5.59e-9   NR HET8689601.1 2213 g8108 i0 40.2 0.696 87 46 64.8 2 362 120 6 92 HET8689601.1 hypothetical protein [Methanosarcina sp.] diamond 261 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30518583 30518583 PRJNA474426_P_NODE_14733_length_270_cov_4.190045_g14528_i0 PRJNA474426 14733 270 4.190045 11.3131215 Methanosarcinales archaeon 2250255 Archaea Archaea 52.4 1.97e-5   NR HUV84265.1 2250255 g14528 i0 39.7 0.755555555555556 68 39 75.6 1 50 253 145 210 HUV84265.1 hypothetical protein [Methanosarcinales archaeon] diamond 204 52.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
30676425 30676425 PRJNA474426_P_NODE_23213_length_204_cov_2.980645_g23008_i0 PRJNA474426 23213 204 2.980645 6.0805158 Methanopyrus sp. SNP6 1937005 Archaea Archaea 42 0.0411   NR WP_148689199.1 1937005 g23008 i0 45.2 0.617647058823529 42 23 61.8 0 26 151 380 421 WP_148689199.1 acetate--CoA ligase family protein [Methanopyrus sp. SNP6] diamond 126 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus sp. SNP6
31656315 31656315 PRJNA474426_P_NODE_15137_length_266_cov_1.290323_g14932_i0 PRJNA474426 15137 266 1.290323 3.43225918 Methanosarcina sp. 2213 Archaea Archaea 103 8.779999999999999e-25   NR HET8689803.1 2213 g14932 i0 59 0.93609022556391 83 34 93.6 0 1 249 112 194 HET8689803.1 tRNA(His) guanylyltransferase Thg1 family protein [Methanosarcina sp.] diamond 249 103 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31972836 31972836 PRJNA474426_P_NODE_18618_length_233_cov_2.467391_g18413_i0 PRJNA474426 18618 233 2.467391 5.74902103 Methanosarcina sp. 2213 Archaea Archaea 114 4.9199999999999993e-29   NR HET8687130.1 2213 g18413 i0 69.4 1.85407725321888 72 22 92.7 0 231 16 196 267 HET8687130.1 hypothetical protein [Methanosarcina sp.] diamond 432 114 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;