RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA474426", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1096916 1096916 PRJNA474426_P_NODE_28841_length_179_cov_2.576923_g28636_i0 PRJNA474426 28841 179 2.576923 4.61269217 Stephanodiscaceae 1365474 SAR_Eukaryotes SAR_Eukaryotes 289 1.0599999999999998e-73   NTclustered gi|2468683651|ref|NC_072630.1| 29208 g28636 i0 99.371 176.72625698324 159 1 89 0 10 168 70129 70287 Stephanodiscus niagarae strain BB16 chloroplast, complete genome blastn 31634 289 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus niagarae
24048904 24048904 PRJNA474426_P_NODE_5899_length_446_cov_1.738035_g5697_i0 PRJNA474426 5899 446 1.738035 7.7516361 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 99.4 5.53e-21   NR KAK1735525.1 267567 g5697 i0 63 3.90807174887892 73 27 49.1 0 216 434 351 423 KAK1735525.1 divalent metal cation transporter [Skeletonema marinoi] diamond 1743 99.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
27202488 27202488 PRJNA474426_P_NODE_32742_length_167_cov_0.881356_g32537_i0 PRJNA474426 32742 167 0.881356 1.47186452 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.28e-4   NR CAB9531141.1 568900 g32537 i0 34.5 0.988023952095808 55 36 98.8 0 166 2 19 73 CAB9531141.1 hypothetical protein SEMRO_3274_G346120.1 [Seminavis robusta] diamond 165 47.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;