RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA474426", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA474426 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4274514 4274514 PRJNA474426_P_NODE_35444_length_163_cov_1.596491_g35239_i0 PRJNA474426 35444 163 1.596491 2.60228033 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|156098200|ref|XM_001615083.1| 5855 g35239 i0 96.875 0.196319018404908 32 1 20 0 19 50 151 182 Plasmodium vivax hypothetical protein, conserved (PVX_090205), partial mRNA blastn 32 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
11926093 11926093 PRJNA474426_P_NODE_1990_length_689_cov_5.560937_g1844_i0 PRJNA474426 1990 689 5.560937 38.31485593 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.005   NTclustered gi|1843422949|dbj|LC541760.1| 5823 g1844 i0 90.698 0.342525399129173 43 3 12 1 10 52 14583 14624 Plasmodium berghei ANKA chromosome 1 telomere region, partial sequence blastn 236 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
29997738 29997738 PRJNA474426_P_NODE_13371_length_286_cov_6.396624_g13166_i0 PRJNA474426 13371 286 6.396624 18.29434464 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0331   NR OEH77175.1 88456 g13166 i0 41.8 1.37412587412587 55 22 56.6 2 13 174 197 242 OEH77175.1 cast domain-containing protein [Cyclospora cayetanensis] diamond 393 43.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
32242409 32242409 PRJNA474426_P_NODE_30738_length_172_cov_2.016260_g30533_i0 PRJNA474426 30738 172 2.01626 3.4679672 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 57 1.26e-7   NR VUZ95235.1 5855 g30533 i0 61.3 3.78488372093023 31 12 54.1 0 95 3 307 337 VUZ95235.1 MORN repeat protein, putative [Plasmodium vivax] diamond 651 57.4 0.993031358885017 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;