RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA474426", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA474426 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29855198 29855198 PRJNA474426_P_NODE_5931_length_444_cov_4.362025_g5728_i0 PRJNA474426 5931 444 4.362025 19.367391 Methanobrevibacter sp. 66852 Archaea Archaea 66.2 9.74e-11   NR MBO7735300.1 66852 g5728 i0 51.7 0.391891891891892 58 27 38.5 1 12 182 64 121 MBO7735300.1 hypothetical protein [Methanobrevibacter sp.] diamond 174 66.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30676425 30676425 PRJNA474426_P_NODE_23213_length_204_cov_2.980645_g23008_i0 PRJNA474426 23213 204 2.980645 6.0805158 Methanopyrus sp. SNP6 1937005 Archaea Archaea 42 0.0411   NR WP_148689199.1 1937005 g23008 i0 45.2 0.617647058823529 42 23 61.8 0 26 151 380 421 WP_148689199.1 acetate--CoA ligase family protein [Methanopyrus sp. SNP6] diamond 126 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus sp. SNP6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;