RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA474426", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA474426 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27802947 27802947 PRJNA474426_P_NODE_36204_length_162_cov_1.752212_g35999_i0 PRJNA474426 36204 162 1.752212 2.83858344 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.4 2.95e-6   NR HXI98625.1 2026741 g35999 i0 58.8 0.62962962962963 34 14 63 0 104 3 4 37 HXI98625.1 M23 family metallopeptidase [Gemmatimonadaceae bacterium] diamond 102 52.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27865792 27865792 PRJNA474426_P_NODE_11525_length_313_cov_2.087121_g11320_i0 PRJNA474426 11525 313 2.087121 6.53268873 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 71.2 2.22e-12   NR MBK6423889.1 2026742 g11320 i0 58.5 0.507987220447284 53 22 50.8 0 206 48 1 53 MBK6423889.1 hypothetical protein [Gemmatimonadota bacterium] diamond 159 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30044556 30044556 PRJNA474426_P_NODE_18611_length_233_cov_2.907609_g18406_i0 PRJNA474426 18611 233 2.907609 6.77472897 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 63.9 1.11e-9   NR WP_291165352.1 1946568 g18406 i0 66 0.682403433476395 53 16 68.2 1 43 201 749 799 WP_291165352.1 hypothetical protein [Gemmatimonas sp. UBA7669] diamond 159 63.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
32636707 32636707 PRJNA474426_P_NODE_12680_length_296_cov_1.036437_g12475_i0 PRJNA474426 12680 296 1.036437 3.06785352 Longimicrobium sp. 2029185 Bacteria Bacteria 48.9 4.41e-4   NR HEY0155627.1 2029185 g12475 i0 32.9 0.77027027027027 76 50 77 1 284 57 180 254 HEY0155627.1 hypothetical protein [Longimicrobium sp.] diamond 228 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;