RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA473824" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 23 ✖

bioproject 1

  • PRJNA473824 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10651021 10651021 PRJNA473824_P_NODE_89329_length_173_cov_3.095588_g88691_i0 PRJNA473824 89329 173 3.095588 5.35536724 Halosolutus gelatinilyticus 2931975 Archaea Archaea 52.8 0.015   NTclustered gi|2225350841|gb|CP095491.1| 2931975 g88691 i0 100 0.161849710982659 28 0 16 0 26 53 608769 608742 Halosolutus gelatinilyticus strain SQT-29-1 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halosolutus Halosolutus gelatinilyticus
11924761 11924761 PRJNA473824_P_NODE_110450_length_173_cov_2.536765_g109812_i0 PRJNA473824 110450 173 2.536765 4.38860345 Natronomonas halophila 2747817 Archaea Archaea 128 2.35e-25   NTclustered gi|1865516082|gb|CP058334.1| 2747817 g109812 i0 97.333 0.872832369942196 75 2 87 0 2 76 1184121 1184047 Natronomonas halophila strain C90 chromosome, complete genome blastn 151 128 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas halophila
15749658 15749658 PRJNA473824_P_NODE_44273_length_184_cov_2.469388_g43635_i0 PRJNA473824 44273 184 2.469388 4.54367392 uncultured Methanoregula sp. 1005933 Archaea Archaea 178 2.48e-40   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g43635 i0 84.409 1.01086956521739 186 23 99 5 2 184 3086411 3086229 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 186 178 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
19572436 19572436 PRJNA473824_P_NODE_19676_length_266_cov_3.960699_g19038_i0 PRJNA473824 19676 266 3.960699 10.53545934 uncultured Methanoregula sp. 1005933 Archaea Archaea 198 2.95e-46   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g19038 i0 88.485 30.8834586466165 165 17 62 2 5 168 3104125 3103962 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 8215 198 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
23399404 23399404 PRJNA473824_P_NODE_60759_length_173_cov_4.757353_g60121_i0 PRJNA473824 60759 173 4.757353 8.23022069 Halorientalis sp. IM1011 1932360 Archaea Archaea 71.3 4.01e-8   NTclustered gi|1142895524|gb|CP019067.1| 1932360 g60121 i0 97.561 1.16763005780347 41 1 24 0 1 41 1718003 1718043 Halorientalis sp. IM1011 chromosome, complete genome blastn 202 71.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis sp. IM1011
26743808 26743808 PRJNA473824_P_NODE_20541_length_260_cov_4.035874_g19903_i0 PRJNA473824 20541 260 4.035874 10.4932724 root 1 Root_unresolved Root_unresolved 45.8 0.00338   NR HWY35635.1 2202732 g19903 i0 88.5 1.30384615384615 26 3 30 0 259 182 147 172 HWY35635.1 VCBS repeat-containing protein [Nitrosopumilaceae archaeon] diamond 339 45.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
27202435 27202435 PRJNA473824_P_NODE_125382_length_164_cov_1.842520_g124744_i0 PRJNA473824 125382 164 1.84252 3.0217328 Nitrososphaerota archaeon 2026795 Archaea Archaea 42 0.0218   NR MDG7000370.1 2026795 g124744 i0 40.4 0.951219512195122 52 28 89.6 1 6 152 161 212 MDG7000370.1 hypothetical protein [Nitrososphaerota archaeon] diamond 156 42 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
27265972 27265972 PRJNA473824_P_NODE_59543_length_173_cov_4.919118_g58905_i0 PRJNA473824 59543 173 4.919118 8.51007414 Halopenitus sp. 1979403 Archaea Archaea 90.1 2.92e-19   NR MFB6235430.1 1979403 g58905 i0 72.3 1.1271676300578 65 10 98.8 1 171 1 111 175 MFB6235430.1 type II secretion system F family protein [Halopenitus sp.] diamond 195 90.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus sp.
27771401 27771401 PRJNA473824_P_NODE_7704_length_495_cov_2.565502_g7120_i0 PRJNA473824 7704 495 2.565502 12.6992349 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 136 4.84e-34   NR MEM2159675.1 2507556 g7120 i0 46 2.96363636363636 163 79 97.6 2 484 2 315 470 MEM2159675.1 hypothetical protein [Candidatus Nitrosotenuis sp.] diamond 1467 136 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.
27882018 27882018 PRJNA473824_P_NODE_160745_length_151_cov_2.649123_g160107_i0 PRJNA473824 160745 151 2.649123 4.00017573 Thermoproteati 1783275 Archaea Archaea 40.8 0.0499   NR WP_338252097.1 54256 g160107 i0 76 1.41059602649007 25 6 49.7 0 3 77 277 301 WP_338252097.1 amidohydrolase [Pyrodictium abyssi] diamond 213 40.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium abyssi
28134786 28134786 PRJNA473824_P_NODE_14345_length_317_cov_4.607143_g13708_i0 PRJNA473824 14345 317 4.607143 14.60464331 root 1 Root_unresolved Root_unresolved 84.3 1.18e-16   NR MDP2750814.1 2026764 g13708 i0 63.8 4.5615141955836 58 21 54.9 0 47 220 294 351 MDP2750814.1 DUF483 domain-containing protein [Nanoarchaeota archaeon] diamond 1446 84.7 0.995277449822904 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
28592199 28592199 PRJNA473824_P_NODE_146847_length_151_cov_4.096491_g146209_i0 PRJNA473824 146847 151 4.096491 6.18570141 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 43.5 5.52e-4   NR MCK5609673.1 2026773 g146209 i0 75 0.834437086092715 20 5 39.7 0 3 62 34 53 MCK5609673.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 126 43.5 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
29318254 29318254 PRJNA473824_P_NODE_63249_length_173_cov_4.477941_g62611_i0 PRJNA473824 63249 173 4.477941 7.74683793 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 57.8 1.13e-8   NR HEY7079367.1 2169593 g62611 i0 51.6 1.10982658959538 64 17 86.7 1 3 152 75 138 HEY7079367.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 192 57.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29444374 29444374 PRJNA473824_P_NODE_160510_length_151_cov_2.754386_g159872_i0 PRJNA473824 160510 151 2.754386 4.15912286 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 97.4 1.19e-22   NR HWY33110.1 2202732 g159872 i0 100 1.98675496688742 50 0 99.3 0 151 2 183 232 HWY33110.1 DUF3375 family protein [Nitrosopumilaceae archaeon] diamond 300 97.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
29586697 29586697 PRJNA473824_P_NODE_164710_length_150_cov_4.743363_g164072_i0 PRJNA473824 164710 150 4.743363 7.1150445 root 1 Root_unresolved Root_unresolved 42 0.0194   NR PNX49271.1 1933281 g164072 i0 86.4 2.98 22 3 44 0 84 149 195 216 PNX49271.1 MAG: terminase [Thermoplasmata archaeon M11B2D] diamond 447 42 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon M11B2D
29649748 29649748 PRJNA473824_P_NODE_111810_length_173_cov_2.477941_g111172_i0 PRJNA473824 111810 173 2.477941 4.28683793 root 1 Root_unresolved Root_unresolved 42 0.028   NR WP_321507132.1 1005933 g111172 i0 57.6 0.988439306358382 33 14 57.2 0 106 8 1288 1320 WP_321507132.1 PKD domain-containing protein [uncultured Methanoregula sp.] diamond 171 42.4 0.990566037735849 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
29665276 29665276 PRJNA473824_P_NODE_58910_length_173_cov_5.007353_g58272_i0 PRJNA473824 58910 173 5.007353 8.66272069 archaeon 1906665 Archaea Archaea 54.3 1.2e-6   NR NCQ52197.1 1906665 g58272 i0 47.2 0.919075144508671 53 25 91.9 1 10 168 210 259 NCQ52197.1 ankyrin repeat domain-containing protein [archaeon] diamond 159 54.3 1 Archaea               archaeon
30187026 30187026 PRJNA473824_P_NODE_138032_length_151_cov_6.912281_g137394_i0 PRJNA473824 138032 151 6.912281 10.43754431 root 1 Root_unresolved Root_unresolved 58.9 1.41e-9   NR WP_206203622.1 1638261 g137394 i0 89.3 1.11258278145695 28 3 55.6 0 1 84 29 56 WP_206203622.1 hypothetical protein, partial [Thermococcus sp. M36] diamond 168 58.9 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. M36
31656291 31656291 PRJNA473824_P_NODE_26257_length_231_cov_5.438144_g25619_i0 PRJNA473824 26257 231 5.438144 12.56211264 Methanothrix sp. 90426 Archaea Archaea 45.8 0.00258   NR MCX6674574.1 90426 g25619 i0 62.5 0.415584415584416 32 12 41.6 0 6 101 644 675 MCX6674574.1 discoidin domain-containing protein [Methanothrix sp.] diamond 96 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
32099357 32099357 PRJNA473824_P_NODE_6598_length_576_cov_1.964750_g6043_i0 PRJNA473824 6598 576 1.96475 11.31696 Candidatus Jordarchaeia archaeon 3067279 Archaea Archaea 52 2.04e-4   NR MBS7251442.1 3067279 g6043 i0 23.2 0.786458333333333 151 92 67.2 5 509 123 54 202 MBS7251442.1 hypothetical protein [Candidatus Jordarchaeia archaeon] diamond 453 52 1 Archaea   Promethearchaeati   Candidatus Jordarchaeia       Candidatus Jordarchaeia archaeon
32447682 32447682 PRJNA473824_P_NODE_38199_length_196_cov_1.716981_g37561_i0 PRJNA473824 38199 196 1.716981 3.36528276 Methanothrix sp. 90426 Archaea Archaea 44.7 0.00325   NR MCK9441979.1 90426 g37561 i0 77.3 1.04081632653061 22 5 33.7 0 1 66 72 93 MCK9441979.1 hypothetical protein [Methanothrix sp.] diamond 204 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
32542566 32542566 PRJNA473824_P_NODE_113319_length_173_cov_2.397059_g112681_i0 PRJNA473824 113319 173 2.397059 4.14691207 Halococcus sp. IIIV-5B 2321230 Archaea Archaea 55.1 2.56e-7   NR WP_120068875.1 2321230 g112681 i0 77.1 1.04046242774566 35 8 60.7 0 2 106 107 141 WP_120068875.1 hypothetical protein [Halococcus sp. IIIV-5B] diamond 180 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp. IIIV-5B
32857313 32857313 PRJNA473824_P_NODE_170680_length_150_cov_3.141593_g170042_i0 PRJNA473824 170680 150 3.141593 4.7123895 Candidatus Altiarchaeales archaeon 2250256 Archaea Archaea 42 0.00853   NR RLI90453.1 2250256 g170042 i0 47.1 0.68 34 18 68 0 6 107 92 125 RLI90453.1 MAG: hypothetical protein DRO95_06160 [Candidatus Altiarchaeales archaeon] diamond 102 42 1 Archaea   Nanobdellati Candidatus Altarchaeota Candidatus Altiarchaeia Candidatus Altarchaeales     Candidatus Altiarchaeales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;