RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473824" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27487023 27487023 PRJNA473824_P_NODE_123143_length_167_cov_1.761538_g122505_i0 PRJNA473824 123143 167 1.761538 2.94176846 Ignavibacteria bacterium 2053306 Bacteria Bacteria 90.9 7.07e-22   NR MCI0474472.1 2053306 g122505 i0 78 1.81437125748503 50 11 89.8 0 161 12 41 90 MCI0474472.1 DUF2071 domain-containing protein [Ignavibacteria bacterium] diamond 303 90.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32067642 32067642 PRJNA473824_P_NODE_37698_length_197_cov_2.237500_g37060_i0 PRJNA473824 37698 197 2.2375 4.407875 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 50.1 1.06e-5   NR MCZ7612581.1 2651163 g37060 i0 44.7 2.87817258883249 47 26 71.6 0 142 2 2 48 MCZ7612581.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 567 50.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;