RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473824" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473824 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4274244 4274244 PRJNA473824_P_NODE_77004_length_173_cov_3.544118_g76366_i0 PRJNA473824 77004 173 3.544118 6.13132414 Chlorobium limicola 1092 Bacteria Bacteria 54.7 0.004   NTclustered gi|189339705|gb|CP001097.1| 290315 g76366 i0 100 0.167630057803468 29 0 17 0 145 173 2266152 2266124 Chlorobium limicola DSM 245 chromosome, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola
26918041 26918041 PRJNA473824_P_NODE_128122_length_160_cov_3.829268_g127484_i0 PRJNA473824 128122 160 3.829268 6.1268288 Chlorobium sp. 1095 Bacteria Bacteria 42.7 0.0112   NR MBV5329137.1 1095 g127484 i0 51.9 0.50625 27 13 50.6 0 79 159 34 60 MBV5329137.1 hypothetical protein [Chlorobium sp.] diamond 81 42.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
31181747 31181747 PRJNA473824_P_NODE_128715_length_159_cov_5.868852_g128077_i0 PRJNA473824 128715 159 5.868852 9.33147468 Chlorobiota bacterium 2268192 Bacteria Bacteria 51.6 8.64e-6   NR NOZ35305.1 2268192 g128077 i0 54.3 1.39622641509434 35 16 66 0 3 107 479 513 NOZ35305.1 hypothetical protein [Chlorobiota bacterium] diamond 222 51.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;