RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473824", tax_phylum = "Bacillariophyta" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA473824 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4924766 4924766 PRJNA473824_P_NODE_66404_length_173_cov_4.183824_g65766_i0 PRJNA473824 66404 173 4.183824 7.23801552 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 145 2.33e-30   NTclustered gi|2468683651|ref|NC_072630.1| 29208 g65766 i0 83.237 3.42774566473988 173 10 100 1 1 173 107407 107560 Stephanodiscus niagarae strain BB16 chloroplast, complete genome blastn 593 145 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus niagarae
32873337 32873337 PRJNA473824_P_NODE_63640_length_173_cov_4.433824_g63002_i0 PRJNA473824 63640 173 4.433824 7.67051552 Stephanodiscaceae 1365474 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00769   NR KAL3803718.1 29204 g63002 i0 80 1.30057803468208 25 5 43.4 0 99 173 169 193 KAL3803718.1 hypothetical protein HJC23_003772 [Cyclotella cryptica] diamond 225 43.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;