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contig_metadata

21 rows where bioproject = "PRJNA473824", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 21 ✖

tax_kingdom 1

  • Pseudomonadati · 21 ✖

bioproject 1

  • PRJNA473824 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4273942 4273942 PRJNA473824_P_NODE_39544_length_193_cov_2.711538_g38906_i0 PRJNA473824 39544 193 2.711538 5.23326834 Desulfobacter sp. 2294 Bacteria Bacteria 75 3.55e-9   NTclustered gi|2447547639|gb|CP054838.1| 2294 g38906 i0 87.5 0.33160621761658 64 8 33 0 107 170 946969 947032 MAG: Desulfobacter sp. isolate Buss2-1 chromosome, complete genome blastn 64 75 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter sp.
5550548 5550548 PRJNA473824_P_NODE_37905_length_196_cov_4.823899_g37267_i0 PRJNA473824 37905 196 4.823899 9.45484204 Bacteria 2 Bacteria Bacteria 104 4.079999999999999e-24   NR WP_295544573.1 1912772 g37267 i0 72.3 14.9387755102041 65 13 99.5 1 2 196 117 176 WP_295544573.1 type IV secretory system conjugative DNA transfer family protein [Halodesulfovibrio sp.] diamond 2928 104 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio sp.
8099626 8099626 PRJNA473824_P_NODE_164127_length_150_cov_5.053097_g163489_i0 PRJNA473824 164127 150 5.053097 7.5796455 Desulfomicrobium orale 132132 Bacteria Bacteria 141 2.53e-29   NTclustered gi|987456218|gb|CP014230.1| 888061 g163489 i0 100 1.01333333333333 76 0 100 0 1 76 113790 113865 Desulfomicrobium orale DSM 12838 chromosome, complete genome blastn 152 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale
11925146 11925146 PRJNA473824_P_NODE_160390_length_151_cov_2.789474_g159752_i0 PRJNA473824 160390 151 2.789474 4.21210574 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 97.1 2.19e-22   NR RPH50413.1 2049433 g159752 i0 78.6 6.67549668874172 56 6 99.3 1 1 150 72 127 RPH50413.1 MAG: GDP-L-fucose synthase [Desulfobacteraceae bacterium] diamond 1008 97.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
13200791 13200791 PRJNA473824_P_NODE_60171_length_173_cov_4.830882_g59533_i0 PRJNA473824 60171 173 4.830882 8.35742586 Desulfomicrobium orale 132132 Bacteria Bacteria 237 3.74e-58   NTclustered gi|987456218|gb|CP014230.1| 888061 g59533 i0 87.356 2.7514450867052 174 21 100 1 1 173 773098 772925 Desulfomicrobium orale DSM 12838 chromosome, complete genome blastn 476 237 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale
13850064 13850064 PRJNA473824_P_NODE_29891_length_218_cov_1.287293_g29253_i0 PRJNA473824 29891 218 1.287293 2.80629874 Geotalea 2910589 Bacteria Bacteria 130 8.650000000000001e-26   NTclustered gi|221562406|gb|CP001390.1| 316067 g29253 i0 79.899 29.7660550458716 199 23 86 13 1 188 2115156 2115348 Geobacter daltonii FRC-32, complete genome blastn 6489 130 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii
15749452 15749452 PRJNA473824_P_NODE_29373_length_219_cov_4.500000_g28735_i0 PRJNA473824 29373 219 4.5 9.855 Desulfarculus baarsii 453230 Bacteria Bacteria 71.3 5.35e-8   NTclustered gi|301638057|gb|CP002085.1| 644282 g28735 i0 90.741 0.246575342465753 54 3 24 2 101 153 1890644 1890592 Desulfarculus baarsii DSM 2075, complete genome blastn 54 71.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii
17024064 17024064 PRJNA473824_P_NODE_27014_length_228_cov_3.952880_g26376_i0 PRJNA473824 27014 228 3.95288 9.0125664 Oceanidesulfovibrio marinus 370038 Bacteria Bacteria 52.8 0.02   NTclustered gi|1841667704|gb|CP039543.1| 370038 g26376 i0 100 0.12280701754386 28 0 12 0 184 211 3134592 3134565 Oceanidesulfovibrio marinus strain CS1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Oceanidesulfovibrio Oceanidesulfovibrio marinus
20847689 20847689 PRJNA473824_P_NODE_103617_length_173_cov_2.698529_g102979_i0 PRJNA473824 103617 173 2.698529 4.66845517 Geobacter sp. SVR 2495594 Bacteria Bacteria 91.6 3.08e-14   NTclustered gi|1976315905|dbj|AP024469.1| 2495594 g102979 i0 90 10.1965317919075 70 7 40 0 1 70 3156244 3156175 Geobacter sp. SVR DNA, complete genome blastn 1764 91.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. SVR
20847765 20847765 PRJNA473824_P_NODE_114517_length_173_cov_2.301471_g113879_i0 PRJNA473824 114517 173 2.301471 3.98154483 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 108 3.06e-19   NTclustered gi|2621785158|emb|OY781616.1| 2795000 g113879 i0 92.105 8.82658959537572 76 6 44 0 98 173 228032 228107 MAG: Maridesulfovibrio sp. isolate 7570950b-8a73-422e-b528-09704edcd613 genome assembly, chromosome: 1 blastn 1527 108 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
23398388 23398388 PRJNA473824_P_NODE_113879_length_173_cov_2.360294_g113241_i0 PRJNA473824 113879 173 2.360294 4.08330862 Desulfomicrobium orale 132132 Bacteria Bacteria 65.8 1.87e-6   NTclustered gi|987456218|gb|CP014230.1| 888061 g113241 i0 95.122 0.445086705202312 41 2 24 0 21 61 2425695 2425735 Desulfomicrobium orale DSM 12838 chromosome, complete genome blastn 77 65.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale
23398642 23398642 PRJNA473824_P_NODE_141999_length_151_cov_5.035088_g141361_i0 PRJNA473824 141999 151 5.035088 7.60298288 Desulfoluna limicola 2810562 Bacteria Bacteria 54.7 0.003   NTclustered gi|2158810072|dbj|AP024488.1| 2810562 g141361 i0 100 0.19205298013245 29 0 19 0 30 58 4567007 4566979 Desulfoluna sp. ASN36 ASN36 DNA, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfolunaceae Desulfoluna Desulfoluna limicola
24048414 24048414 PRJNA473824_P_NODE_42159_length_188_cov_2.072848_g41521_i0 PRJNA473824 42159 188 2.072848 3.89695424 Pseudomonadati 3379134 Bacteria Bacteria 113 2.7600000000000004e-27   NR WP_374290838.1 876 g41521 i0 88.7 3.95744680851064 62 7 98.9 0 188 3 355 416 WP_374290838.1 ATP-binding protein [Desulfovibrio desulfuricans] diamond 744 113 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
27708482 27708482 PRJNA473824_P_NODE_27384_length_227_cov_1.536842_g26746_i0 PRJNA473824 27384 227 1.536842 3.48863134 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 72.4 8.24e-15   NR MCH8014820.1 2080303 g26746 i0 57.6 3.11894273127753 59 24 76.7 1 1 174 12 70 MCH8014820.1 tetratricopeptide repeat protein [Candidatus Dadabacteria bacterium] diamond 708 72.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
29475918 29475918 PRJNA473824_P_NODE_66030_length_173_cov_4.213235_g65392_i0 PRJNA473824 66030 173 4.213235 7.28889655 Syntrophobacter fumaroxidans 119484 Bacteria Bacteria 43.9 0.00576   NR WP_011698309.1 119484 g65392 i0 62.5 0.416184971098266 24 9 41.6 0 74 3 348 371 WP_011698309.1 PAS domain S-box protein [Syntrophobacter fumaroxidans] diamond 72 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans
29649753 29649753 PRJNA473824_P_NODE_45630_length_181_cov_14.305556_g44992_i0 PRJNA473824 45630 181 14.305556 25.89305636 Bacteria 2 Bacteria Bacteria 85.1 3.42e-19   NR MDQ1269207.1 2202153 g44992 i0 71.2 7.70718232044199 59 17 97.8 0 179 3 78 136 MDQ1269207.1 rare lipoprotein [Thermodesulfobacteriota bacterium] diamond 1395 85.9 0.990686845168801 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30613221 30613221 PRJNA473824_P_NODE_143553_length_151_cov_4.649123_g142915_i0 PRJNA473824 143553 151 4.649123 7.02017573 Desulfuromonadales bacterium 2099678 Bacteria Bacteria 43.1 0.00705   NR MBK5275779.1 2099678 g142915 i0 43.5 0.913907284768212 46 26 91.4 0 143 6 14 59 MBK5275779.1 hypothetical protein [Desulfuromonadales bacterium] diamond 138 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium
30676399 30676399 PRJNA473824_P_NODE_32813_length_209_cov_3.151163_g32175_i0 PRJNA473824 32813 209 3.151163 6.58593067 uncultured Desulfovibrio sp. 167968 Bacteria Bacteria 44.7 0.00498   NR WP_296303755.1 167968 g32175 i0 60 0.502392344497608 35 14 50.2 0 106 2 196 230 WP_296303755.1 PcfJ domain-containing protein [uncultured Desulfovibrio sp.] diamond 105 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.
32020650 32020650 PRJNA473824_P_NODE_16558_length_292_cov_1.329412_g15920_i0 PRJNA473824 16558 292 1.329412 3.88188304 Pseudomonadati 3379134 Bacteria Bacteria 49.3 3.38e-4   NR MBI5250990.1 2358 g15920 i0 52.4 1.36643835616438 42 20 43.2 0 157 32 360 401 MBI5250990.1 DUF1311 domain-containing protein [Desulfomonile tiedjei] diamond 399 49.7 0.991951710261569 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
32036070 32036070 PRJNA473824_P_NODE_15918_length_298_cov_5.915709_g15280_i0 PRJNA473824 15918 298 5.915709 17.62881282 Halodesulfovibrio spirochaetisodalis 1560234 Bacteria Bacteria 95.1 2.88e-20   NR WP_066856630.1 1560234 g15280 i0 67.2 0.614093959731544 61 20 61.4 0 115 297 1 61 WP_066856630.1 DNA topoisomerase III [Halodesulfovibrio spirochaetisodalis] diamond 183 95.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio spirochaetisodalis
32888686 32888686 PRJNA473824_P_NODE_34640_length_204_cov_3.970060_g34002_i0 PRJNA473824 34640 204 3.97006 8.0989224 Syntrophales bacterium 2928017 Bacteria Bacteria 117 1.19e-28   NR HVO67705.1 2928017 g34002 i0 76.1 0.985294117647059 67 16 98.5 0 4 204 770 836 HVO67705.1 PAS domain S-box protein [Syntrophales bacterium] diamond 201 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;