RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473824", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA473824 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24672538 24672538 PRJNA473824_P_NODE_144280_length_151_cov_4.508772_g143642_i0 PRJNA473824 144280 151 4.508772 6.80824572 Spiroplasma phoeniceum 47835 Bacteria Bacteria 54.7 0.003   NTclustered gi|2331042467|gb|CP110830.1| 47835 g143642 i0 100 0.384105960264901 29 0 19 0 3 31 906790 906818 MAG: Spiroplasma phoeniceum isolate PmM2021_Spiro chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma phoeniceum
31245241 31245241 PRJNA473824_P_NODE_142935_length_151_cov_4.789474_g142297_i0 PRJNA473824 142935 151 4.789474 7.23210574 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 44.3 5.02e-4   NR MDV3191329.1 2754999 g142297 i0 76 0.496688741721854 25 6 49.7 0 76 150 38 62 MDV3191329.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 75 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;