RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA473824", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA473824 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2996777 2996777 PRJNA473824_P_NODE_109923_length_173_cov_2.558824_g109285_i0 PRJNA473824 109923 173 2.558824 4.42676552 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 92.4 3.32e-20   NR WP_227625107.1 1005039 g109285 i0 65.8 2.53179190751445 73 9 98.8 1 3 173 183 255 WP_227625107.1 ammonium transporter [Fimbriimonas ginsengisoli] diamond 438 92.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
27929113 27929113 PRJNA473824_P_NODE_163445_length_150_cov_5.575221_g162807_i0 PRJNA473824 163445 150 5.575221 8.3628315 Fimbriimonas sp. 1936159 Bacteria Bacteria 49.7 3.63e-5   NR MDR3690583.1 1936159 g162807 i0 83.3 0.48 24 4 48 0 77 148 261 284 MDR3690583.1 SRPBCC domain-containing protein [Fimbriimonas sp.] diamond 72 49.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
27960593 27960593 PRJNA473824_P_NODE_111425_length_173_cov_2.492647_g110787_i0 PRJNA473824 111425 173 2.492647 4.31227931 Armatimonadota bacterium 2033014 Bacteria Bacteria 87.4 2.61e-18   NR MFM7320922.1 2033014 g110787 i0 67.1 16.9942196531792 70 10 98.8 1 173 3 524 593 MFM7320922.1 ATP cone domain-containing protein [Armatimonadota bacterium] diamond 2940 87.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28308006 28308006 PRJNA473824_P_NODE_102266_length_173_cov_2.727941_g101628_i0 PRJNA473824 102266 173 2.727941 4.71933793 Fimbriimonas sp. 1936159 Bacteria Bacteria 84 2.83e-17   NR HEY0866896.1 1936159 g101628 i0 58.8 3.53757225433526 68 17 98.8 1 172 2 185 252 HEY0866896.1 Gfo/Idh/MocA family oxidoreductase [Fimbriimonas sp.] diamond 612 84 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;