RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473824", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA473824 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20847935 20847935 PRJNA473824_P_NODE_130837_length_157_cov_1.175000_g130199_i0 PRJNA473824 130837 157 1.175 1.84475 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 263 5.5000000000000005e-66   NTclustered gi|56757963|gb|AY815390.1| 6182 g130199 i0 96.835 99.6496815286624 158 4 100 1 1 157 1632 1475 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 15645 263 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24048551 24048551 PRJNA473824_P_NODE_6759_length_561_cov_4.992366_g6198_i0 PRJNA473824 6759 561 4.992366 28.00717326 root 1 Root_unresolved Root_unresolved 1037 0   NTclustered gi|226473471|emb|FN315689.1| 6182 g6198 i0 100 100 561 0 100 0 1 561 615 55 Schistosoma japonicum isolate Anhui full length mRNA clone SJFCA3765.014|FSA001-P00032-P16, complete sequence blastn 56100 1037 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;