RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473824", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA473824 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13850095 13850095 PRJNA473824_P_NODE_33811_length_206_cov_5.656805_g33173_i0 PRJNA473824 33811 206 5.656805 11.6530183 Fungi 4751 Fungi Fungi 381 2.0199999999999994e-101   NTclustered gi|658131632|emb|HF968958.1| 4874 g33173 i0 100 147.184466019417 206 0 100 0 1 206 2197 1992 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 30320 381 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
20848721 20848721 PRJNA473824_P_NODE_55037_length_173_cov_5.779412_g54399_i0 PRJNA473824 55037 173 5.779412 9.99838276 Parasitella parasitica 35722 Fungi Fungi 71.3 4.01e-8   NTclustered gi|689358021|ref|NC_024944.1| 35722 g54399 i0 84.932 17.4335260115607 73 8 42 3 1 72 40727 40657 Parasitella parasitica strain CBS 412.66 mitochondrion, complete genome blastn 3016 71.3 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Parasitella Parasitella parasitica
28608271 28608271 PRJNA473824_P_NODE_81607_length_173_cov_3.323529_g80969_i0 PRJNA473824 81607 173 3.323529 5.74970517 Fungi 4751 Fungi Fungi 44.7 0.00295   NR YP_203306.1 64495 g80969 i0 81.8 3.6242774566474 22 4 38.2 0 173 108 194 215 YP_203306.1 orf291 [Rhizopus arrhizus] diamond 627 44.7 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus arrhizus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;