RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473824", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA473824 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3647603 3647603 PRJNA473824_P_NODE_38983_length_194_cov_3.235669_g38345_i0 PRJNA473824 38983 194 3.235669 6.27719786 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 261 2.56e-65   NTclustered gi|2414483|emb|Y00055.1| 5656 g38345 i0 91.192 121.185567010309 193 16 99 1 2 194 6835 7026 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 23510 263 0.992395437262357 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
4924343 4924343 PRJNA473824_P_NODE_132324_length_155_cov_1.983051_g131686_i0 PRJNA473824 132324 155 1.983051 3.07372905 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 231 1.53e-56   NTclustered gi|440222388|gb|JX030056.1| 5659 g131686 i0 93.548 83.2322580645161 155 10 100 0 1 155 175 21 Leishmania amazonensis isolate LaPH8.rRNA.32 28S ribosomal RNA (LSU-delta M2), partial sequence blastn 12901 231 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;