RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA473824" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA473824 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3647603 3647603 PRJNA473824_P_NODE_38983_length_194_cov_3.235669_g38345_i0 PRJNA473824 38983 194 3.235669 6.27719786 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 261 2.56e-65   NTclustered gi|2414483|emb|Y00055.1| 5656 g38345 i0 91.192 121.185567010309 193 16 99 1 2 194 6835 7026 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 23510 263 0.992395437262357 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
4924343 4924343 PRJNA473824_P_NODE_132324_length_155_cov_1.983051_g131686_i0 PRJNA473824 132324 155 1.983051 3.07372905 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 231 1.53e-56   NTclustered gi|440222388|gb|JX030056.1| 5659 g131686 i0 93.548 83.2322580645161 155 10 100 0 1 155 175 21 Leishmania amazonensis isolate LaPH8.rRNA.32 28S ribosomal RNA (LSU-delta M2), partial sequence blastn 12901 231 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
14474869 14474869 PRJNA473824_P_NODE_129412_length_158_cov_8.099174_g128774_i0 PRJNA473824 129412 158 8.099174 12.79669492 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 287 3.29e-73   NTclustered gi|2031941764|emb|OD957973.1| 5763 g128774 i0 99.367 7.5 158 1 100 0 1 158 249 92 Naegleria fowleri Karachi_NF001 strain blastn 1185 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
18298616 18298616 PRJNA473824_P_NODE_50415_length_174_cov_5.328467_g49777_i0 PRJNA473824 50415 174 5.328467 9.27153258 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 135 1.41e-27   NTclustered gi|2031939004|emb|OD957472.1| 5763 g49777 i0 97.468 2.18965517241379 79 2 89 0 1 79 855 933 Naegleria fowleri Karachi_NF001 strain blastn 381 135 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;