RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA473824", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 12 ✖

tax_clade 1

  • Bacteria candidate phyla · 12 ✖

bioproject 1

  • PRJNA473824 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2372246 2372246 PRJNA473824_P_NODE_99722_length_173_cov_2.779412_g99084_i0 PRJNA473824 99722 173 2.779412 4.80838276 Bacteria 2 Bacteria Bacteria 75 3.1e-9   NTclustered gi|837350690|gb|CP011211.1| 1619070 g99084 i0 92.308 0.901734104046243 52 4 30 0 25 76 831219 831168 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 156 75 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
14475631 14475631 PRJNA473824_P_NODE_51292_length_174_cov_1.138686_g50654_i0 PRJNA473824 51292 174 1.138686 1.98131364 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 97.1 6.67e-16   NTclustered gi|1958002866|gb|CP064959.1| 2026720 g50654 i0 89.744 2.11494252873563 78 4 44 4 99 174 765872 765797 Candidatus Saccharibacteria bacterium isolate AalW_18-Q3-R10-53_BAT3C.508_uni chromosome, complete genome blastn 368 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
22122664 22122664 PRJNA473824_P_NODE_118618_length_172_cov_2.555556_g117980_i0 PRJNA473824 118618 172 2.555556 4.39555632 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 187 3.79e-43   NTclustered gi|2070571752|gb|CP072208.2| 2725942 g117980 i0 84.884 3.43604651162791 172 17 100 1 1 172 469086 468924 MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome blastn 591 187 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium
22123567 22123567 PRJNA473824_P_NODE_51318_length_174_cov_1.131387_g50680_i0 PRJNA473824 51318 174 1.131387 1.96861338 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 294 2.1999999999999998e-75   NTclustered gi|1474570736|gb|CP023991.1| 2026720 g50680 i0 97.126 59.7241379310345 174 5 100 0 1 174 882660 882833 Candidatus Saccharibacteria bacterium isolate CG19_WC_8_21_14_NA_150_51_44 chromosome, complete genome blastn 10392 294 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27170875 27170875 PRJNA473824_P_NODE_62642_length_173_cov_4.544118_g62004_i0 PRJNA473824 62642 173 4.544118 7.86132414 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 43.5 0.0078   NR HEY0965346.1 2973664 g62004 i0 78.3 1.17919075144509 23 5 39.9 0 103 171 349 371 HEY0965346.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 204 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
28923841 28923841 PRJNA473824_P_NODE_72148_length_173_cov_3.779412_g71510_i0 PRJNA473824 72148 173 3.779412 6.53838276 Candidatus Nanoperiomorbus 2171988 Bacteria Bacteria 51.6 1.07e-5   NR MCG5079764.1 2026720 g71510 i0 100 0.867052023121387 25 0 43.4 0 75 1 22 46 MCG5079764.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 150 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
29034416 29034416 PRJNA473824_P_NODE_80068_length_173_cov_3.382353_g79430_i0 PRJNA473824 80068 173 3.382353 5.85147069 Candidatus Saccharibacteria bacterium 32-49-12 1970479 Bacteria Bacteria 98.2 5.659999999999999e-24   NR OYX41352.1 1970479 g79430 i0 86 0.988439306358382 57 2 98.8 1 3 173 98 148 OYX41352.1 MAG: hypothetical protein B7Y94_05285 [Candidatus Saccharibacteria bacterium 32-49-12] diamond 171 98.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-49-12
29381493 29381493 PRJNA473824_P_NODE_86769_length_173_cov_3.169118_g86131_i0 PRJNA473824 86769 173 3.169118 5.48257414 Candidatus Nanoperiomorbus periodonticus 2171989 Bacteria Bacteria 53.1 3.03e-6   NR WP_129619217.1 2171989 g86131 i0 96 0.433526011560694 25 1 43.4 0 75 1 145 169 WP_129619217.1 Fic family protein [Candidatus Nanoperiomorbus periodonticus] diamond 75 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanoperiomorbia Candidatus Nanoperiomorbales Candidatus Nanoperiomorbaceae Candidatus Nanoperiomorbus Candidatus Nanoperiomorbus periodonticus
29507702 29507702 PRJNA473824_P_NODE_75690_length_173_cov_3.610294_g75052_i0 PRJNA473824 75690 173 3.610294 6.24580862 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 51.6 1.08e-5   NR MBB1558430.1 2026720 g75052 i0 100 0.433526011560694 25 0 43.4 0 75 1 49 73 MBB1558430.1 DNA translocase FtsK [Candidatus Saccharibacteria bacterium] diamond 75 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30408628 30408628 PRJNA473824_P_NODE_26753_length_229_cov_4.291667_g26115_i0 PRJNA473824 26753 229 4.291667 9.82791743 Bacteria 2 Bacteria Bacteria 93.6 7.290000000000001e-22   NR OGL23189.1 1802133 g26115 i0 85.1 1.23144104803493 47 7 61.6 0 87 227 19 65 OGL23189.1 MAG: hypothetical protein A2791_05135 [Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_01_FULL_46_30] diamond 282 94.4 0.991525423728813 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_01_FULL_46_30
30897872 30897872 PRJNA473824_P_NODE_70954_length_173_cov_3.852941_g70316_i0 PRJNA473824 70954 173 3.852941 6.66558793 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 51.2 2.65e-6   NR MDO4712836.1 2026720 g70316 i0 50 1.94219653179191 56 21 97.1 1 3 170 45 93 MDO4712836.1 AraC family ligand binding domain-containing protein [Candidatus Saccharibacteria bacterium] diamond 336 51.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31245271 31245271 PRJNA473824_P_NODE_63355_length_173_cov_4.463235_g62717_i0 PRJNA473824 63355 173 4.463235 7.72139655 TM7 phylum sp. oral taxon 35 713052 Bacteria Bacteria 54.3 1.12e-6   NR TWP07762.1 713052 g62717 i0 100 0.433526011560694 25 0 43.4 0 1 75 91 115 TWP07762.1 hypothetical protein EUA76_02565 [TM7 phylum sp. oral taxon 350] diamond 75 54.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 350

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;