RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA473799" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA473799 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6823515 6823515 PRJNA473799_P_NODE_45006_length_246_cov_0.890173_g44732_i0 PRJNA473799 45006 246 0.890173 2.18982558 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 444 3.14e-120   NTclustered gi|166046624|emb|CU367741.1| 100861 g44732 i0 99.187 53.349593495935 246 2 100 0 1 246 40 285 Aphanomyces euteiches cDNA blastn 13124 444 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22122198 22122198 PRJNA473799_P_NODE_35438_length_251_cov_0.865169_g35164_i0 PRJNA473799 35438 251 0.865169 2.17157419 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|813143131|ref|XM_012344133.1| 695850 g35164 i0 100 0.111553784860558 28 0 11 0 68 95 1436 1409 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
23397904 23397904 PRJNA473799_P_NODE_34679_length_251_cov_0.882022_g34405_i0 PRJNA473799 34679 251 0.882022 2.21387522 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 420 5.41e-113   NTclustered gi|325194231|emb|FR825088.1| 890382 g34405 i0 96.813 1.31075697211155 251 8 100 0 1 251 444 694 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 329 420 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27834203 27834203 PRJNA473799_P_NODE_28704_length_261_cov_1.606383_g28430_i0 PRJNA473799 28704 261 1.606383 4.19265963 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 145 1.6499999999999998e-42   NR CAI5713440.1 86335 g28430 i0 81.6 1 87 16 100 0 261 1 47 133 CAI5713440.1 unnamed protein product [Peronospora destructor] diamond 261 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
30424145 30424145 PRJNA473799_P_NODE_22733_length_273_cov_1.050000_g22459_i0 PRJNA473799 22733 273 1.05 2.8665 Peronospora farinosa 134698 SAR_Eukaryotes SAR_Eukaryotes 140 2.29e-40   NR CAI5704134.1 134698 g22459 i0 75.8 1 91 22 100 0 273 1 20 110 CAI5704134.1 unnamed protein product [Peronospora farinosa] diamond 273 140 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;