RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473799", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Cossaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473799 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2996643 2996643 PRJNA473799_P_NODE_55403_length_237_cov_4.152439_g55129_i0 PRJNA473799 55403 237 4.152439 9.84128043 Gammapapillomavirus 11 1513256 Viruses Viruses 438 1.4e-118   NTclustered gi|1653972938|gb|MK620831.1| 1682341 g55129 i0 100 2 237 0 100 0 1 237 244 8 Human papillomavirus 202 strain HPV202/S21-UI/CO/2018 L2 gene, partial cds blastn 474 438 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 11
20847048 20847048 PRJNA473799_P_NODE_16917_length_285_cov_1.377358_g16643_i0 PRJNA473799 16917 285 1.377358 3.9254703 Gammapapillomavirus 11 1513256 Viruses Viruses 521 1.6699999999999996e-143   NTclustered gi|870702434|gb|KP692116.1| 1682341 g16643 i0 99.649 1.85614035087719 285 1 100 0 1 285 202 486 Human papillomavirus type 202 isolate HPV202, complete genome blastn 529 521 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;