RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA473799" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA473799 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1720683 1720683 PRJNA473799_P_NODE_46382_length_245_cov_0.895349_g46108_i0 PRJNA473799 46382 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 165 3.38e-45   NR KND47241.1 1659198 g46108 i0 96.3 32.730612244898 81 3 99.2 0 244 2 608 688 KND47241.1 MAG: ATP-dependent Clp protease ATP-binding subunit ClpB [Parcubacteria bacterium C7867-004] diamond 8019 166 0.993975903614458 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium C7867-004
28055208 28055208 PRJNA473799_P_NODE_56425_length_231_cov_2.670886_g56151_i0 PRJNA473799 56425 231 2.670886 6.16974666 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 109 6.72e-26   NR MCI0597836.1 2762014 g56151 i0 72.4 0.987012987012987 76 21 98.7 0 230 3 358 433 MCI0597836.1 GTP-binding protein [Candidatus Parcubacteria bacterium] diamond 228 109 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
28749977 28749977 PRJNA473799_P_NODE_36367_length_250_cov_1.186441_g36093_i0 PRJNA473799 36367 250 1.186441 2.9661025 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 92.4 4.58e-20   NR MEN9921582.1 2762014 g36093 i0 80.4 0.612 51 10 61.2 0 153 1 1 51 MEN9921582.1 glyceraldehyde 3-phosphate dehydrogenase, glyceraldehyde 3-phosphate dehydrogenase [Candidatus Parcubacteria bacterium] diamond 153 92.4 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
30518510 30518510 PRJNA473799_P_NODE_16033_length_287_cov_1.210280_g15759_i0 PRJNA473799 16033 287 1.21028 3.4735036 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 153 6.82e-45   NR RJR13230.1 2762014 g15759 i0 97.9 0.993031358885017 95 2 99.3 0 286 2 13 107 RJR13230.1 MAG: translation initiation factor IF-3 [Candidatus Parcubacteria bacterium] diamond 285 153 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31181731 31181731 PRJNA473799_P_NODE_42535_length_247_cov_0.885057_g42261_i0 PRJNA473799 42535 247 0.885057 2.18609079 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 87.8 5.58e-18   NR RJQ13687.1 2762014 g42261 i0 59 1.73684210526316 83 30 99.6 2 246 1 353 432 RJQ13687.1 MAG: DUF2341 domain-containing protein [Candidatus Parcubacteria bacterium] diamond 429 87.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32384082 32384082 PRJNA473799_P_NODE_24199_length_270_cov_1.065990_g23925_i0 PRJNA473799 24199 270 1.06599 2.878173 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 128 2.8e-32   NR MFM2374360.1 2762014 g23925 i0 77.5 0.888888888888889 80 18 88.9 0 268 29 580 659 MFM2374360.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 240 128 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;