RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA473799", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA473799 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6823379 6823379 PRJNA473799_P_NODE_36486_length_250_cov_0.870056_g36212_i0 PRJNA473799 36486 250 0.870056 2.17514 Candidatus Methanomassiliicoccus intestinalis 1406512 Archaea Archaea 171 5.99e-38   NTclustered gi|1721134172|emb|LR698974.1| 1406512 g36212 i0 79.365 58.872 252 44 98 6 1 246 1455352 1455103 Candidatus Methanomassiliicoccus intestinalis isolate MGYG-HGUT-02160 genome assembly, chromosome: 1 blastn 14718 171 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Candidatus Methanomassiliicoccus intestinalis
31024128 31024128 PRJNA473799_P_NODE_47875_length_244_cov_0.900585_g47601_i0 PRJNA473799 47875 244 0.900585 2.1974274 Thermoplasmatota archaeon 2806419 Archaea Archaea 83.6 1.65e-16   NR HWG91861.1 2806419 g47601 i0 48.8 1.0327868852459 84 40 99.6 1 244 2 666 749 HWG91861.1 amino acid adenylation domain-containing protein [Thermoplasmatota archaeon] diamond 252 83.6 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;