RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA473799", tax_clade = "core chlorophytes" and tax_kingdom = "Viridiplantae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 5 ✖

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA473799 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1720736 1720736 PRJNA473799_P_NODE_49782_length_243_cov_0.905882_g49508_i0 PRJNA473799 49782 243 0.905882 2.20129326 Desmochloris halophila 138176 Plants Plants 433 6.69e-117   NTclustered gi|371782123|emb|HE610155.1| 138176 g49508 i0 98.765 115.683127572016 243 3 100 0 1 243 2230 1988 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 28111 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
5549046 5549046 PRJNA473799_P_NODE_13925_length_293_cov_1.586364_g13651_i0 PRJNA473799 13925 293 1.586364 4.64804652 Polytomella parva 51329 Plants Plants 52.8 0.027   NTclustered gi|1861356485|gb|MT377470.1| 51329 g13651 i0 94.118 0.116040955631399 34 2 12 0 46 79 1191 1224 Polytomella parva clone 0016335261 alpha-amylase (AMY) mRNA, partial cds; plastid blastn 34 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
20222235 20222235 PRJNA473799_P_NODE_56456_length_231_cov_2.468354_g56182_i0 PRJNA473799 56456 231 2.468354 5.70189774 Eukaryota 2759 Plants Plants 425 1.0599999999999999e-114   NTclustered gi|944383253|gb|KR607498.1| 332221 g56182 i0 100 99.5670995670996 230 0 99 0 1 230 587 816 Neochlorosarcina negevensis small subunit ribosomal RNA gene, partial sequence blastn 23000 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Neochlorosarcina Neochlorosarcina negevensis
22772802 22772802 PRJNA473799_P_NODE_39618_length_248_cov_2.285714_g39344_i0 PRJNA473799 39618 248 2.285714 5.66857072 Watanabeaceae 2981775 Plants Plants 459 1.13e-124   NTclustered gi|1560019362|gb|MG515421.1| 167235 g39344 i0 100 100.20564516129 248 0 100 0 1 248 1509 1756 Uncultured Trebouxiophyceae clone LSY2027 18S ribosomal RNA gene, partial sequence blastn 24851 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
29539190 29539190 PRJNA473799_P_NODE_31230_length_257_cov_1.059783_g30956_i0 PRJNA473799 31230 257 1.059783 2.72364231 Coccomyxa viridis 1274662 Plants Plants 45.1 0.00639   NR CAK0780810.1 1274662 g30956 i0 61.3 1.08560311284047 31 12 36.2 0 161 253 275 305 CAK0780810.1 Subunit of heteropentameric Replication factor C (RF-C) [Coccomyxa viridis] diamond 279 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;