RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473799", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA473799 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13199707 13199707 PRJNA473799_P_NODE_9931_length_335_cov_1.549618_g9657_i0 PRJNA473799 9931 335 1.549618 5.1912203 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 553 7.099999999999998e-153   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g9657 i0 96.418 36.8268656716418 335 12 100 0 1 335 348 14 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 12337 553 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
26633027 26633027 PRJNA473799_P_NODE_44101_length_246_cov_0.890173_g43827_i0 PRJNA473799 44101 246 0.890173 2.18982558 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.77e-4   NR XP_001030759.2 312017 g43827 i0 42.3 0.634146341463415 52 30 63.4 0 18 173 172 223 XP_001030759.2 hypothetical protein TTHERM_01015990 [Tetrahymena thermophila SB210] diamond 156 49.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31593391 31593391 PRJNA473799_P_NODE_32516_length_254_cov_2.044199_g32242_i0 PRJNA473799 32516 254 2.044199 5.19226546 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 65.9 3.15e-10   NR KRW99809.1 266149 g32242 i0 72.1 0.507874015748031 43 12 50.8 0 119 247 897 939 KRW99809.1 Protein kinase-like domain [Pseudocohnilembus persalinus] diamond 129 65.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;