RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473799", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA473799 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24047504 24047504 PRJNA473799_P_NODE_13779_length_294_cov_1.968326_g13505_i0 PRJNA473799 13779 294 1.968326 5.78687844 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 145 4.3699999999999995e-30   NTclustered gi|2202538974|gb|OM891880.1| 355634 g13505 i0 87.805 53.5374149659864 123 15 42 0 119 241 3709 3831 Navicula arenaria small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15740 145 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula arenaria
26727592 26727592 PRJNA473799_P_NODE_31101_length_257_cov_1.157609_g30827_i0 PRJNA473799 31101 257 1.157609 2.97505513 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 132 8.239999999999998e-35   NR KAG7362008.1 303405 g30827 i0 71.1 0.968871595330739 83 24 96.9 0 254 6 163 245 KAG7362008.1 retrotransposon hot spot protein [Nitzschia inconspicua] diamond 249 132 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;