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contig_metadata

27 rows where bioproject = "PRJNA473799", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 27 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJNA473799 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4923844 4923844 PRJNA473799_P_NODE_27624_length_263_cov_1.621053_g27350_i0 PRJNA473799 27624 263 1.621053 4.26336939 Neochlamydia 112987 Bacteria Bacteria 259 1.32e-64   NTclustered gi|194594624|gb|EU662269.1| 112235 g27350 i0 87.611 129.125475285171 226 24 86 4 1 225 2201 1979 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 33960 259 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
6823340 6823340 PRJNA473799_P_NODE_34026_length_252_cov_1.117318_g33752_i0 PRJNA473799 34026 252 1.117318 2.81564136 Estrella lausannensis 483423 Bacteria Bacteria 178 3.61e-40   NTclustered gi|343183590|gb|JN201889.1| 483423 g33752 i0 86.875 103.111111111111 160 19 63 2 14 172 2281 2439 Estrella lausannensis 23S ribosomal RNA gene, complete sequence blastn 25984 178 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
7473821 7473821 PRJNA473799_P_NODE_45446_length_245_cov_1.488372_g45172_i0 PRJNA473799 45446 245 1.488372 3.6465114 Parachlamydia 83551 Bacteria Bacteria 375 1.16e-99   NTclustered gi|470491594|ref|NR_077046.1| 83552 g45172 i0 94.309 134.673469387755 246 13 100 1 1 245 784 1029 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 32995 375 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
24047594 24047594 PRJNA473799_P_NODE_23919_length_270_cov_1.974619_g23645_i0 PRJNA473799 23919 270 1.974619 5.3314713 Parachlamydiaceae 92713 Bacteria Bacteria 370 6.02e-98   NTclustered gi|470491594|ref|NR_077046.1| 83552 g23645 i0 92.045 169.474074074074 264 20 98 1 1 264 919 1181 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 45758 372 0.99462365591397806 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
26981224 26981224 PRJNA473799_P_NODE_27402_length_264_cov_1.052356_g27128_i0 PRJNA473799 27402 264 1.052356 2.77821984 Chlamydia psittaci 83554 Bacteria Bacteria 89.7 1.66e-21   NR EPJ15176.1 1112252 g27128 i0 73.8 1.52272727272727 61 16 69.3 0 51 233 4 64 EPJ15176.1 nef attachable domain protein [Chlamydia psittaci 01DC11] diamond 402 90.5 0.991160220994475 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
26981227 26981227 PRJNA473799_P_NODE_30942_length_257_cov_1.581522_g30668_i0 PRJNA473799 30942 257 1.581522 4.06451154 Chlamydia psittaci 83554 Bacteria Bacteria 55.8 1.86e-8   NR EPL02241.1 1112270 g30668 i0 78.8 0.385214007782101 33 7 38.5 0 139 237 1 33 EPL02241.1 hypothetical protein CP09DC79_1187, partial [Chlamydia psittaci 09DC79] diamond 99 55.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
27218535 27218535 PRJNA473799_P_NODE_49682_length_243_cov_0.947059_g49408_i0 PRJNA473799 49682 243 0.947059 2.30135337 Chlamydia 810 Bacteria Bacteria 44.7 8.16e-4   NR EPP32998.1 1112249 g49408 i0 50 2.24691358024691 46 17 56.8 1 91 228 9 48 EPP32998.1 nef attachable domain protein, partial [Chlamydia psittaci C6/98] diamond 546 45.1 0.991130820399113 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
27360858 27360858 PRJNA473799_P_NODE_9263_length_349_cov_0.978261_g8989_i0 PRJNA473799 9263 349 0.978261 3.41413089 Chlamydia psittaci 83554 Bacteria Bacteria 40.8 0.0376   NR EPJ27361.1 1112269 g8989 i0 76.9 0.223495702005731 26 6 22.3 0 3 80 6 31 EPJ27361.1 nef attachable domain protein [Chlamydia psittaci 09DC78] diamond 78 40.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
27455603 27455603 PRJNA473799_P_NODE_10903_length_319_cov_1.353659_g10629_i0 PRJNA473799 10903 319 1.353659 4.31817221 Chlamydia psittaci 83554 Bacteria Bacteria 64.3 1.87e-11   NR EPJ22990.1 1112267 g10629 i0 83.3 0.338557993730408 36 6 33.9 0 110 217 2 37 EPJ22990.1 hypothetical protein CP08DC60_1241 [Chlamydia psittaci 08DC60] diamond 108 64.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
27834210 27834210 PRJNA473799_P_NODE_38984_length_249_cov_0.875000_g38710_i0 PRJNA473799 38984 249 0.875 2.17875 Chlamydia psittaci C6/98 1112249 Bacteria Bacteria 70.9 2.82e-14   NR EPP32891.1 1112249 g38710 i0 76.7 0.518072289156627 43 10 51.8 0 131 3 1 43 EPP32891.1 nef attachable domain protein [Chlamydia psittaci C6/98] diamond 129 70.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
28749976 28749976 PRJNA473799_P_NODE_35087_length_251_cov_0.865169_g34813_i0 PRJNA473799 35087 251 0.865169 2.17157419 Chlamydiota bacterium 2081524 Bacteria Bacteria 86.7 5.73e-18   NR MEC7838608.1 2081524 g34813 i0 48.8 1.87649402390438 82 42 98 0 249 4 37 118 MEC7838608.1 NUDIX domain-containing protein [Chlamydiota bacterium] diamond 471 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29097369 29097369 PRJNA473799_P_NODE_27708_length_263_cov_1.431579_g27434_i0 PRJNA473799 27708 263 1.431579 3.76505277 Chlamydia psittaci 83554 Bacteria Bacteria 60.8 2.58e-10   NR EPJ26271.1 1112262 g27434 i0 66.7 0.479087452471483 42 14 47.9 0 208 83 3 44 EPJ26271.1 nef attachable domain protein, partial [Chlamydia psittaci 03DC29] diamond 126 60.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29192104 29192104 PRJNA473799_P_NODE_35209_length_251_cov_0.865169_g34935_i0 PRJNA473799 35209 251 0.865169 2.17157419 Chlamydia psittaci C1/97 1112248 Bacteria Bacteria 62.8 4.12e-11   NR EPP30779.1 1112248 g34935 i0 70.5 1.50597609561753 44 13 52.6 0 159 28 4 47 EPP30779.1 nef attachable domain protein, partial [Chlamydia psittaci C1/97] diamond 378 62.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29223750 29223750 PRJNA473799_P_NODE_48449_length_244_cov_0.900585_g48175_i0 PRJNA473799 48449 244 0.900585 2.1974274 Chlamydia psittaci C6/98 1112249 Bacteria Bacteria 43.9 0.00118   NR EPP32891.1 1112249 g48175 i0 47.7 0.540983606557377 44 23 54.1 0 184 53 8 51 EPP32891.1 nef attachable domain protein [Chlamydia psittaci C6/98] diamond 132 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29412886 29412886 PRJNA473799_P_NODE_43209_length_247_cov_0.620690_g42935_i0 PRJNA473799 43209 247 0.62069 1.5331043 Chlamydia psittaci C6/98 1112249 Bacteria Bacteria 67.8 6.06e-13   NR EPP32773.1 1112249 g42935 i0 60.3 0.765182186234818 63 10 58.3 1 160 17 1 63 EPP32773.1 putative lipoprotein, partial [Chlamydia psittaci C6/98] diamond 189 67.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29444354 29444354 PRJNA473799_P_NODE_41670_length_247_cov_1.609195_g41396_i0 PRJNA473799 41670 247 1.609195 3.97471165 Chlamydia psittaci 83554 Bacteria Bacteria 40.8 0.0197   NR EPJ17938.1 1112257 g41396 i0 50 0.437246963562753 36 18 43.7 0 113 220 6 41 EPJ17938.1 hypothetical protein CP02DC21_1499 [Chlamydia psittaci 02DC21] diamond 108 40.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29633619 29633619 PRJNA473799_P_NODE_27550_length_263_cov_1.989474_g27276_i0 PRJNA473799 27550 263 1.989474 5.23231662 Chlamydia trachomatis 813 Bacteria Bacteria 76.6 3.6e-16   NR WP_216594844.1 813 g27276 i0 43 0.901140684410646 79 45 90.1 0 25 261 1 79 WP_216594844.1 hypothetical protein, partial [Chlamydia trachomatis] diamond 237 76.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
29886792 29886792 PRJNA473799_P_NODE_27931_length_263_cov_1.084211_g27657_i0 PRJNA473799 27931 263 1.084211 2.85147493 Chlamydia psittaci C1/97 1112248 Bacteria Bacteria 77.4 9.66e-17   NR EPP30549.1 1112248 g27657 i0 67.3 0.593155893536122 52 17 59.3 0 178 23 5 56 EPP30549.1 hypothetical protein CPC197_1956 [Chlamydia psittaci C1/97] diamond 156 77.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30565949 30565949 PRJNA473799_P_NODE_18693_length_281_cov_1.466346_g18419_i0 PRJNA473799 18693 281 1.466346 4.12043226 Chlamydia 810 Bacteria Bacteria 47.4 1.01e-4   NR EPP30345.1 1112248 g18419 i0 41 1.12099644128114 61 36 65.1 0 47 229 2 62 EPP30345.1 nef attachable domain protein, partial [Chlamydia psittaci C1/97] diamond 315 47.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30613201 30613201 PRJNA473799_P_NODE_48013_length_244_cov_0.900585_g47739_i0 PRJNA473799 48013 244 0.900585 2.1974274 Chlamydia psittaci 83554 Bacteria Bacteria 43.1 0.00353   NR EPL02381.1 1112253 g47739 i0 65.6 0.39344262295082 32 11 39.3 0 87 182 41 72 EPL02381.1 hypothetical protein CP02DC14_1897 [Chlamydia psittaci 02DC14] diamond 96 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30866012 30866012 PRJNA473799_P_NODE_34634_length_251_cov_1.157303_g34360_i0 PRJNA473799 34634 251 1.157303 2.90483053 Chlamydia psittaci 83554 Bacteria Bacteria 42.7 0.00358   NR EPJ15232.1 1112256 g34360 i0 76 0.597609561752988 25 6 29.9 0 108 34 28 52 EPJ15232.1 putative nef attachable protein, partial [Chlamydia psittaci 02DC18] diamond 150 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30960982 30960982 PRJNA473799_P_NODE_15394_length_288_cov_2.190698_g15120_i0 PRJNA473799 15394 288 2.190698 6.30921024 Chlamydia psittaci 83554 Bacteria Bacteria 53.9 2.13e-7   NR EPJ27355.1 1112269 g15120 i0 54 0.520833333333333 50 23 52.1 0 21 170 2 51 EPJ27355.1 nef attachable domain protein [Chlamydia psittaci 09DC78] diamond 150 53.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31024131 31024131 PRJNA473799_P_NODE_56395_length_231_cov_3.006329_g56121_i0 PRJNA473799 56395 231 3.006329 6.94461999 Chlamydia psittaci C6/98 1112249 Bacteria Bacteria 56.2 1.77e-8   NR EPP32773.1 1112249 g56121 i0 54.4 0.74025974025974 57 23 74 1 220 50 1 54 EPP32773.1 putative lipoprotein, partial [Chlamydia psittaci C6/98] diamond 171 56.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31403572 31403572 PRJNA473799_P_NODE_40176_length_248_cov_0.931429_g39902_i0 PRJNA473799 40176 248 0.931429 2.30994392 Chlamydia psittaci 83554 Bacteria Bacteria 71.6 1.87e-14   NR EPL02186.1 1112270 g39902 i0 64.3 0.508064516129032 42 15 50.8 0 245 120 23 64 EPL02186.1 nef attachable domain protein, partial [Chlamydia psittaci 09DC79] diamond 126 71.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31940974 31940974 PRJNA473799_P_NODE_54197_length_241_cov_0.916667_g53923_i0 PRJNA473799 54197 241 0.916667 2.20916747 Chlamydia psittaci 83554 Bacteria Bacteria 82 1.35e-18   NR EPJ15176.1 1112252 g53923 i0 75.9 1.38174273858921 58 14 72.2 0 24 197 4 61 EPJ15176.1 nef attachable domain protein [Chlamydia psittaci 01DC11] diamond 333 82 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31972791 31972791 PRJNA473799_P_NODE_8438_length_369_cov_2.385135_g8164_i0 PRJNA473799 8438 369 2.385135 8.80114815 Chlamydia psittaci 83554 Bacteria Bacteria 50.8 8.09e-6   NR EPJ15232.1 1112256 g8164 i0 62.5 0.390243902439024 48 18 39 0 217 360 1 48 EPJ15232.1 putative nef attachable protein, partial [Chlamydia psittaci 02DC18] diamond 144 50.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32305670 32305670 PRJNA473799_P_NODE_14199_length_292_cov_1.054795_g13925_i0 PRJNA473799 14199 292 1.054795 3.0800014 Chlamydia 810 Bacteria Bacteria 48.1 4.97e-5   NR EPP30515.1 1112248 g13925 i0 91.7 0.493150684931507 24 2 24.7 0 150 221 1 24 EPP30515.1 hypothetical protein CPC197_2045, partial [Chlamydia psittaci C1/97] diamond 144 48.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;