RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA473799", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13199228 13199228 PRJNA473799_P_NODE_27331_length_264_cov_1.099476_g27057_i0 PRJNA473799 27331 264 1.099476 2.90261664 Ignavibacteria bacterium 2053306 Bacteria Bacteria 88.2 9.38e-19   NR MBK8982481.1 2053306 g27057 i0 87.5 1.09090909090909 48 6 54.5 0 119 262 1 48 MBK8982481.1 3-hydroxybutyryl-CoA dehydrogenase [Ignavibacteria bacterium] diamond 288 88.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
26823180 26823180 PRJNA473799_P_NODE_50041_length_243_cov_0.905882_g49767_i0 PRJNA473799 50041 243 0.905882 2.20129326 Ignavibacteria bacterium 2053306 Bacteria Bacteria 159 9.29e-45   NR MEO6696078.1 2053306 g49767 i0 96.3 0.987654320987654 80 3 98.8 0 242 3 232 311 MEO6696078.1 elongation factor G [Ignavibacteria bacterium] diamond 240 159 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
26981229 26981229 PRJNA473799_P_NODE_45482_length_245_cov_1.441860_g45208_i0 PRJNA473799 45482 245 1.44186 3.532557 Ignavibacteria bacterium 2053306 Bacteria Bacteria 136 8.189999999999999e-38   NR MBK9403442.1 2053306 g45208 i0 91.4 0.991836734693878 81 7 99.2 0 3 245 147 227 MBK9403442.1 EcsC family protein [Ignavibacteria bacterium] diamond 243 136 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30329485 30329485 PRJNA473799_P_NODE_35312_length_251_cov_0.865169_g35038_i0 PRJNA473799 35312 251 0.865169 2.17157419 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 139 9.02e-37   NR MBP7543656.1 2651163 g35038 i0 74.7 0.99203187250996006 83 21 99.2 0 249 1 113 195 MBP7543656.1 IS21 family transposase [Ignavibacteriaceae bacterium] diamond 249 139 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;