RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473799", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA473799 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29349940 29349940 PRJNA473799_P_NODE_36829_length_250_cov_0.870056_g36555_i0 PRJNA473799 36829 250 0.870056 2.17514 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 67.4 8.28e-11   NR MBN1604604.1 2813024 g36555 i0 46.1 2.688 89 35 98.4 4 3 248 246 328 MBN1604604.1 hypothetical protein [Chitinispirillaceae bacterium] diamond 672 67.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
29602125 29602125 PRJNA473799_P_NODE_55770_length_235_cov_2.740741_g55496_i0 PRJNA473799 55770 235 2.740741 6.44074135 Fibrobacterota bacterium 2052160 Bacteria Bacteria 68.2 1.16e-12   NR MEK7392796.1 2052160 g55496 i0 52.5 0.778723404255319 61 29 77.9 0 233 51 44 104 MEK7392796.1 GNVR domain-containing protein [Fibrobacterota bacterium] diamond 183 68.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;