RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA473799", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA473799 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9373660 9373660 PRJNA473799_P_NODE_488_length_1780_cov_13.510838_g397_i0 PRJNA473799 488 1780 13.510838 240.4929164 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 2566 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g397 i0 92.713 44.1522471910112 1784 121 100 9 1 1780 12 1790 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 78591 2566 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
11298762 11298762 PRJNA473799_P_NODE_13309_length_298_cov_1.368889_g13035_i0 PRJNA473799 13309 298 1.368889 4.07928922 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 545 1.04e-150   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g13035 i0 99.664 65.3724832214765 298 1 100 0 1 298 250 547 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 19481 545 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
13199587 13199587 PRJNA473799_P_NODE_51651_length_242_cov_0.911243_g51377_i0 PRJNA473799 51651 242 0.911243 2.20520806 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 187 5.73e-43   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g51377 i0 94.958 15.0537190082645 119 6 49 0 124 242 3856 3974 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3643 187 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
19571788 19571788 PRJNA473799_P_NODE_7536_length_398_cov_1.516923_g7262_i0 PRJNA473799 7536 398 1.516923 6.03735354 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 176 2.17e-39   NTclustered gi|38606347|gb|AY376155.1| 51637 g7262 i0 84.358 25.1005025125628 179 28 45 0 1 179 1336 1158 Naegleria lovaniensis isolate 7372 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 9990 176 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;