RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA473799", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 5 ✖

tax_clade 1

  • CRuMs · 5 ✖

bioproject 1

  • PRJNA473799 · 5 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4923748 4923748 PRJNA473799_P_NODE_19004_length_280_cov_2.077295_g18730_i0 PRJNA473799 19004 280 2.077295 5.816426 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 6.83e-38   NTclustered gi|1200177733|gb|MF039367.1| 190325 g18730 i0 92.5 67.4178571428571 120 7 43 2 128 246 4765 4883 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18877 171 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
10649719 10649719 PRJNA473799_P_NODE_57489_length_223_cov_6.266667_g57215_i0 PRJNA473799 57489 223 6.266667 13.97466741 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 241 3.94e-59   NTclustered gi|300078503|gb|GU001165.1| 238746 g57215 i0 91.111 56.0762331838565 180 13 80 3 1 178 523 345 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12505 241 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
10649749 10649749 PRJNA473799_P_NODE_8909_length_356_cov_24.038869_g8635_i0 PRJNA473799 8909 356 24.038869 85.57837364 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 337 8.31e-88   NTclustered gi|300078503|gb|GU001165.1| 238746 g8635 i0 83.944 70.5926966292135 355 48 98 7 3 350 4080 4432 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25131 337 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
13199256 13199256 PRJNA473799_P_NODE_2931_length_821_cov_10.608289_g2693_i0 PRJNA473799 2931 821 10.608289 87.09405269 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 846 0   NTclustered gi|300078503|gb|GU001165.1| 238746 g2693 i0 85.377 68.4774665042631 848 88 100 27 1 821 3246 2408 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 56220 846 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
23398265 23398265 PRJNA473799_P_NODE_8039_length_380_cov_4.087948_g7765_i0 PRJNA473799 8039 380 4.087948 15.5342024 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 675 0   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g7765 i0 98.688 100.605263157895 381 3 100 2 1 380 692 1071 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 38230 675 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;