RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA473799", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Sumerlaeota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA473799 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11924690 11924690 PRJNA473799_P_NODE_9410_length_345_cov_1.698529_g9136_i0 PRJNA473799 9410 345 1.698529 5.85992505 Candidatus Sumerlaea chitinivorans 2250252 Bacteria Bacteria 368 2.85e-97   NTclustered gi|1419285073|gb|CP030759.1| 2250252 g9136 i0 86.402 190.376811594203 353 29 98 13 7 345 161248 160901 Candidatus Sumerlaea chitinivorans isolate BY40 chromosome, complete genome blastn 65680 368 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae Candidatus Sumerlaea Candidatus Sumerlaea chitinivorans
32762805 32762805 PRJNA473799_P_NODE_15840_length_287_cov_1.957944_g15566_i0 PRJNA473799 15840 287 1.957944 5.61929928 Candidatus Sumerlaeota bacterium 2107588 Bacteria Bacteria 102 1.35e-23   NR MBI1785028.1 2107588 g15566 i0 75.7 1.47386759581882 74 9 67.9 2 93 287 10 83 MBI1785028.1 substrate-binding domain-containing protein [Candidatus Sumerlaeota bacterium] diamond 423 102 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         Candidatus Sumerlaeota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;