RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473799", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Rokuibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA473799 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9373563 9373563 PRJNA473799_P_NODE_42148_length_247_cov_0.885057_g41874_i0 PRJNA473799 42148 247 0.885057 2.18609079 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 159 2.08e-45   NR MBM4442942.1 2053607 g41874 i0 95.1 0.995951417004049 82 4 99.6 0 247 2 192 273 MBM4442942.1 L-seryl-tRNA(Sec) selenium transferase [Candidatus Rokuibacteriota bacterium] diamond 246 159 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
28166276 28166276 PRJNA473799_P_NODE_30605_length_258_cov_1.135135_g30331_i0 PRJNA473799 30605 258 1.135135 2.9286483 Bacteria 2 Bacteria Bacteria 111 7.389999999999999e-30   NR PYN06591.1 2053607 g30331 i0 98.2 4.47674418604651 55 1 64 0 258 94 41 95 PYN06591.1 MAG: DNA-binding protein [Candidatus Rokuibacteriota bacterium] diamond 1155 112 0.991071428571429 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
31719729 31719729 PRJNA473799_P_NODE_56297_length_232_cov_2.402516_g56023_i0 PRJNA473799 56297 232 2.402516 5.57383712 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 134 1.36e-37   NR MBM4442605.1 2053607 g56023 i0 87.1 1.81034482758621 70 9 90.5 0 230 21 151 220 MBM4442605.1 endonuclease III [Candidatus Rokuibacteriota bacterium] diamond 420 134 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;