RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473799", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA473799 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6823360 6823360 PRJNA473799_P_NODE_35266_length_251_cov_0.865169_g34992_i0 PRJNA473799 35266 251 0.865169 2.17157419 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 409 1.17e-109   NTclustered gi|909719645|gb|KT185625.1| 5778 g34992 i0 96.016 27.7768924302789 251 10 100 0 1 251 6760 7010 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6972 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23397570 23397570 PRJNA473799_P_NODE_10179_length_330_cov_2.821012_g9905_i0 PRJNA473799 10179 330 2.821012 9.3093396 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 564 3.23e-156   NTclustered gi|54306228|gb|AY626163.1| 297386 g9905 i0 97.576 81.6727272727273 330 7 100 1 1 330 642 970 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 26952 564 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;