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contig_metadata

20 rows where bioproject = "PRJNA473641" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA473641 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
445225 445225 PRJNA473641_P_NODE_2921_length_503_cov_1.374419_g2838_i0 PRJNA473641 2921 503 1.374419 6.91332757 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 229 3.82e-69   NR OQR94786.1 74557 g2838 i0 71.9 10.9562624254473 167 47 99.6 0 2 502 320 486 OQR94786.1 chaperonin CPN60-1, mitochondrial precursor [Thraustotheca clavata] diamond 5511 230 0.995652173913044 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
5548696 5548696 PRJNA473641_P_NODE_2225_length_564_cov_1.602851_g2143_i0 PRJNA473641 2225 564 1.602851 9.04007964 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 427 7.91e-115   NTclustered gi|166043465|emb|CU359703.1| 100861 g2143 i0 83.058 69.7978723404255 484 68 85 12 44 520 529 53 Aphanomyces euteiches cDNA blastn 39366 427 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
5548804 5548804 PRJNA473641_P_NODE_2625_length_525_cov_1.586283_g2542_i0 PRJNA473641 2625 525 1.586283 8.32798575 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 146 7.029999999999998e-42   NR DBA05327.1 4803 g2542 i0 64.8 7.90285714285714 105 37 60 0 199 513 1 105 DBA05327.1 TPA: hypothetical protein N0F65_007489 [Lagenidium giganteum] diamond 4149 146 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
6822885 6822885 PRJNA473641_P_NODE_6026_length_378_cov_1.570492_g5943_i0 PRJNA473641 6026 378 1.570492 5.93645976 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 154 9.6e-33   NTclustered gi|166036439|emb|CU349481.1| 100861 g5943 i0 80.905 6.48412698412698 199 34 52 2 3 199 558 754 Aphanomyces euteiches cDNA blastn 2451 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9372620 9372620 PRJNA473641_P_NODE_14368_length_273_cov_1.570000_g14285_i0 PRJNA473641 14368 273 1.57 4.2861 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 243 1.39e-59   NTclustered gi|698785784|ref|XM_009827634.1| 112090 g14285 i0 86.425 95.1648351648352 221 30 81 0 26 246 163 383 Aphanomyces astaci histone H3 partial mRNA blastn 25980 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11298704 11298704 PRJNA473641_P_NODE_3669_length_459_cov_5.196891_g3586_i0 PRJNA473641 3669 459 5.196891 23.85372969 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 235 4.12e-57   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g3586 i0 84.979 68.3050108932462 233 34 51 1 226 457 299 67 Aphanomyces astaci polyubiquitin mRNA blastn 31352 235 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18296464 18296464 PRJNA473641_P_NODE_14175_length_275_cov_1.500000_g14092_i0 PRJNA473641 14175 275 1.5 4.125 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 158 5.21e-34   NTclustered gi|698810055|ref|XM_009839755.1| 112090 g14092 i0 77.407 1.82909090909091 270 58 98 3 1 269 1106 839 Aphanomyces astaci transitional endoplasmic reticulum ATPase mRNA blastn 503 158 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18296648 18296648 PRJNA473641_P_NODE_21255_length_246_cov_0.890173_g21172_i0 PRJNA473641 21255 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 103 2.0799999999999994e-23   NR XP_008865564.1 157072 g21172 i0 64.6 23.1341463414634 79 28 96.3 0 3 239 895 973 XP_008865564.1 hypothetical protein H310_03471 [Aphanomyces invadans] diamond 5691 104 0.990384615384615 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24047419 24047419 PRJNA473641_P_NODE_21499_length_246_cov_0.890173_g21416_i0 PRJNA473641 21499 246 0.890173 2.18982558 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 94.4 1.72e-20   NR KAF1329210.1 82926 g21416 i0 71 12.2682926829268 62 18 75.6 0 244 59 359 420 KAF1329210.1 Cell division cycle protein 20, partial [Globisporangium splendens] diamond 3018 95.1 0.992639327024185 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
28023822 28023822 PRJNA473641_P_NODE_25225_length_242_cov_0.911243_g25142_i0 PRJNA473641 25225 242 0.911243 2.20520806 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 59.7 1.62e-8   NR KAF0694748.1 120398 g25142 i0 52.6 1.41322314049587 57 20 70.7 1 172 2 5 54 KAF0694748.1 hypothetical protein As57867_014370 [Aphanomyces stellatus] diamond 342 59.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
28197633 28197633 PRJNA473641_P_NODE_6746_length_363_cov_2.244828_g6663_i0 PRJNA473641 6746 363 2.244828 8.14872564 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 150 2.38e-43   NR TMW65749.1 41045 g6663 i0 73.1 5.4297520661157 104 26 86 1 314 3 26 127 TMW65749.1 hypothetical protein Poli38472_008391 [Pythium oligandrum] diamond 1971 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28892190 28892190 PRJNA473641_P_NODE_6528_length_367_cov_5.411565_g6445_i0 PRJNA473641 6528 367 5.411565 19.86044355 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 121 3.4600000000000003e-29   NR RHY32367.1 157072 g6445 i0 69 3.29427792915531 100 31 81.7 0 28 327 171 270 RHY32367.1 hypothetical protein DYB32_003166 [Aphanomyces invadans] diamond 1209 122 0.991803278688525 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
29239779 29239779 PRJNA473641_P_NODE_18789_length_249_cov_0.875000_g18706_i0 PRJNA473641 18789 249 0.875 2.17875 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 62.4 4.73e-9   NR KAG9400180.1 112091 g18706 i0 45.7 4.19277108433735 70 38 84.3 0 17 226 534 603 KAG9400180.1 AP-4 complex subunit beta-1 [Aphanomyces cochlioides] diamond 1044 62.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
29618244 29618244 PRJNA473641_P_NODE_16170_length_258_cov_0.935135_g16087_i0 PRJNA473641 16170 258 0.935135 2.4126483 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.00193   NR TMW60351.1 41045 g16087 i0 37.9 2.36046511627907 87 43 98.8 3 3 257 81 158 TMW60351.1 hypothetical protein Poli38472_000393 [Pythium oligandrum] diamond 609 46.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30755928 30755928 PRJNA473641_P_NODE_6454_length_369_cov_1.395270_g6371_i0 PRJNA473641 6454 369 1.39527 5.1485463 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 107 1.71e-26   NR XP_008864102.1 157072 g6371 i0 45.8 10.5528455284553 118 62 95.9 1 362 9 67 182 XP_008864102.1 hypothetical protein H310_02387, partial [Aphanomyces invadans] diamond 3894 107 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
31024106 31024106 PRJNA473641_P_NODE_10475_length_310_cov_2.299578_g10392_i0 PRJNA473641 10475 310 2.299578 7.1286918 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 116 1.36e-31   NR XP_008616217.1 1156394 g10392 i0 65.2 2.67096774193548 69 24 66.8 0 295 89 9 77 XP_008616217.1 hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] diamond 828 116 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
31388114 31388114 PRJNA473641_P_NODE_5036_length_404_cov_4.000000_g4953_i0 PRJNA473641 5036 404 4 16.16 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 127 3.74e-35   NR DBA05427.1 4803 g4953 i0 70.5 6.02227722772277 88 26 65.3 0 379 116 1 88 DBA05427.1 TPA: hypothetical protein N0F65_007589, partial [Lagenidium giganteum] diamond 2433 127 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32242400 32242400 PRJNA473641_P_NODE_14758_length_270_cov_1.274112_g14675_i0 PRJNA473641 14758 270 1.274112 3.4401024 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 63.2 3.4e-9   NR KAH9124220.1 100861 g14675 i0 64.3 6.37777777777778 42 15 46.7 0 1 126 308 349 KAH9124220.1 hypothetical protein AeMF1_004971 [Aphanomyces euteiches] diamond 1722 63.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32352742 32352742 PRJNA473641_P_NODE_22259_length_245_cov_0.895349_g22176_i0 PRJNA473641 22259 245 0.895349 2.19360505 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 123 1.24e-30   NR TMW59720.1 41045 g22176 i0 74.1 6.94285714285714 81 21 99.2 0 243 1 178 258 TMW59720.1 hypothetical protein Poli38472_004789 [Pythium oligandrum] diamond 1701 123 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32762799 32762799 PRJNA473641_P_NODE_18080_length_250_cov_0.870056_g17997_i0 PRJNA473641 18080 250 0.870056 2.17514 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 98.6 5.649999999999999e-23   NR KAJ0412463.1 114742 g17997 i0 59.5 1.776 74 30 88.8 0 29 250 174 247 KAJ0412463.1 hypothetical protein ATCC90586_005483 [Pythium insidiosum] diamond 444 98.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;