RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473641" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473641 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4271942 4271942 PRJNA473641_P_NODE_18064_length_250_cov_0.870056_g17981_i0 PRJNA473641 18064 250 0.870056 2.17514 Mycoplasma cottewii 51364 Bacteria Bacteria 457 4.1099999999999985e-124   NTclustered gi|2294785939|gb|CP103424.1| 51364 g17981 i0 99.6 196.916 250 1 100 0 1 250 270692 270443 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 49229 457 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
11923709 11923709 PRJNA473641_P_NODE_21270_length_246_cov_0.890173_g21187_i0 PRJNA473641 21270 246 0.890173 2.18982558 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|1428096589|gb|MH627353.1| 167967 g21187 i0 100 106.642276422764 246 0 100 0 1 246 1096 1341 Uncultured Mycoplasma sp. clone 4_40 16S ribosomal RNA gene, partial sequence blastn 26234 455 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
28355551 28355551 PRJNA473641_P_NODE_13266_length_283_cov_1.309524_g13183_i0 PRJNA473641 13266 283 1.309524 3.70595292 Bacillati 1783272 Bacteria Bacteria 95.5 6.81e-21   NR WP_406602273.1 2125 g13183 i0 61.1 16.9399293286219 72 28 76.3 0 233 18 3 74 WP_406602273.1 molecular chaperone DnaJ [Metamycoplasma sualvi] diamond 4794 96.3 0.991692627206646 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma sualvi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;