RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA473641" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 29 ✖

tax_clade 1

bioproject 1

  • PRJNA473641 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
444785 444785 PRJNA473641_P_NODE_11081_length_304_cov_1.658009_g10998_i0 PRJNA473641 11081 304 1.658009 5.04034736 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 507 5.03e-139   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g10998 i0 96.711 2.37828947368421 304 10 100 0 1 304 6819 7122 Cryptocaryon irritans mitochondrion, complete genome blastn 723 507 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
445255 445255 PRJNA473641_P_NODE_4141_length_438_cov_2.583562_g4058_i0 PRJNA473641 4141 438 2.583562 11.31600156 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 784 0   NTclustered gi|2234196641|dbj|LC627764.1| 153251 g4058 i0 98.866 3.98630136986301 441 2 100 3 1 438 966 526 Cryptocaryon irritans UT2 mRNA for agglutination/immobilization antigen, partial cds, clone: UT2_i_antigen_1 blastn 1746 784 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
1719689 1719689 PRJNA473641_P_NODE_13662_length_279_cov_2.577670_g13579_i0 PRJNA473641 13662 279 2.57767 7.1916993 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 499 7.63e-137   NTclustered gi|1004125725|gb|KU761582.1| 153251 g13579 i0 98.925 100.268817204301 279 3 100 0 1 279 5616 5338 Cryptocaryon irritans isolate ND1410 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, and intergenic spacer, complete sequence blastn 27975 499 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
8098009 8098009 PRJNA473641_P_NODE_16907_length_251_cov_2.022472_g16824_i0 PRJNA473641 16907 251 2.022472 5.07640472 Paramecium primaurelia 5886 SAR_Eukaryotes SAR_Eukaryotes 87.8 8.42e-21   NR CAD8069261.1 5886 g16824 i0 70.3 2.28286852589641 64 19 76.5 0 28 219 1 64 CAD8069261.1 unnamed protein product [Paramecium primaurelia] diamond 573 87.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
9373032 9373032 PRJNA473641_P_NODE_6848_length_361_cov_9.906250_g6765_i0 PRJNA473641 6848 361 9.90625 35.7615625 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 667 0   NTclustered gi|1004125725|gb|KU761582.1| 153251 g6765 i0 100 99.6149584487535 361 0 100 0 1 361 2494 2134 Cryptocaryon irritans isolate ND1410 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, and intergenic spacer, complete sequence blastn 35961 667 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
11923449 11923449 PRJNA473641_P_NODE_1130_length_745_cov_3.431548_g1058_i0 PRJNA473641 1130 745 3.431548 25.5650326 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 329 3.08e-85   NTclustered gi|471230286|ref|XM_004036375.1| 5932 g1058 i0 75.61 24.8228187919463 697 153 92 15 1 689 646 1333 Ichthyophthirius multifiliis hypothetical protein (IMG5_083250) mRNA, complete cds blastn 18493 329 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
13198381 13198381 PRJNA473641_P_NODE_11391_length_301_cov_2.447368_g11308_i0 PRJNA473641 11391 301 2.447368 7.36657768 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 527 3.819999999999999e-145   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g11308 i0 98.658 91.6943521594684 298 3 99 1 1 297 5389 5686 Cryptocaryon irritans mitochondrion, complete genome blastn 27600 527 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
14473533 14473533 PRJNA473641_P_NODE_1672_length_633_cov_2.612500_g1590_i0 PRJNA473641 1672 633 2.6125 16.537125 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 1092 0   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g1590 i0 97.937 57.9794628751975 630 13 99 0 4 633 6416 5787 Cryptocaryon irritans mitochondrion, complete genome blastn 36701 1092 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
17022365 17022365 PRJNA473641_P_NODE_19934_length_248_cov_0.880000_g19851_i0 PRJNA473641 19934 248 0.88 2.1824 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 359 1.18e-94   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g19851 i0 92.771 46.1088709677419 249 17 100 1 1 248 32218 31970 Cryptocaryon irritans mitochondrion, complete genome blastn 11435 359 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
17022614 17022614 PRJNA473641_P_NODE_6634_length_365_cov_1.880137_g6551_i0 PRJNA473641 6634 365 1.880137 6.86250005 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 595 1.2799999999999998e-165   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g6551 i0 96.164 1 365 12 99 2 1 363 7088 7452 Cryptocaryon irritans mitochondrion, complete genome blastn 365 595 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
18296831 18296831 PRJNA473641_P_NODE_4255_length_434_cov_1.033241_g4172_i0 PRJNA473641 4255 434 1.033241 4.48426594 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 560 5.63e-155   NTclustered gi|1779767357|gb|MK861969.1| 153251 g4172 i0 90.278 26.5299539170507 432 36 99 3 1 432 2105 1680 Cryptocaryon irritans isolate GD1 dnaK mRNA, complete cds blastn 11514 560 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
20846847 20846847 PRJNA473641_P_NODE_5177_length_401_cov_1.021341_g5094_i0 PRJNA473641 5177 401 1.021341 4.09557741 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 603 8.459999999999999e-168   NTclustered gi|1779767357|gb|MK861969.1| 153251 g5094 i0 93.766 62.3266832917706 401 25 100 0 1 401 1603 1203 Cryptocaryon irritans isolate GD1 dnaK mRNA, complete cds blastn 24993 603 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
22121711 22121711 PRJNA473641_P_NODE_4938_length_408_cov_1.465672_g4855_i0 PRJNA473641 4938 408 1.465672 5.97994176 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 555 2.45e-153   NTclustered gi|1779767357|gb|MK861969.1| 153251 g4855 i0 91.379 3.77450980392157 406 34 99 1 1 406 1214 810 Cryptocaryon irritans isolate GD1 dnaK mRNA, complete cds blastn 1540 555 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
23397524 23397524 PRJNA473641_P_NODE_8319_length_336_cov_7.422053_g8236_i0 PRJNA473641 8319 336 7.422053 24.93809808 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 621 1.9299999999999997e-173   NTclustered gi|1161057763|gb|KY440336.1| 153251 g8236 i0 100 100.145833333333 336 0 100 0 1 336 1561 1226 Cryptocaryon irritans isolate CN_CL_2012 18S ribosomal RNA gene, partial sequence blastn 33649 621 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
26727579 26727579 PRJNA473641_P_NODE_17761_length_250_cov_1.926554_g17678_i0 PRJNA473641 17761 250 1.926554 4.816385 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 48.9 5.87e-5   NR KAL4426775.1 5901 g17678 i0 42 0.6 50 28 60 1 155 6 55 103 KAL4426775.1 hypothetical protein ABPG74_006572 [Tetrahymena malaccensis] diamond 150 48.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
26949523 26949523 PRJNA473641_P_NODE_22702_length_245_cov_0.895349_g22619_i0 PRJNA473641 22702 245 0.895349 2.19360505 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 88.2 1.71e-18   NR KRX03899.1 266149 g22619 i0 60.6 1.61632653061224 66 25 79.6 1 243 49 230 295 KRX03899.1 Protein kinase-like domain [Pseudocohnilembus persalinus] diamond 396 88.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
28307984 28307984 PRJNA473641_P_NODE_23366_length_244_cov_0.900585_g23283_i0 PRJNA473641 23366 244 0.900585 2.1974274 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 166 9.52e-50   NR BAF38023.1 153251 g23283 i0 97.5 0.983606557377049 80 2 98.4 0 242 3 39 118 BAF38023.1 elongation factor-1 alpha isoform-3, partial [Cryptocaryon irritans] diamond 240 166 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
29129067 29129067 PRJNA473641_P_NODE_4629_length_419_cov_2.312139_g4546_i0 PRJNA473641 4629 419 2.312139 9.68786241 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.0168   NR XP_004036836.1 5932 g4546 i0 44.2 0.372315035799523 52 29 37.2 0 50 205 20 71 XP_004036836.1 nucleosome assembly protein, putative [Ichthyophthirius multifiliis] diamond 156 45.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29760150 29760150 PRJNA473641_P_NODE_16171_length_258_cov_0.935135_g16088_i0 PRJNA473641 16171 258 0.935135 2.4126483 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 46.2 0.00268   NR XP_004037463.1 5932 g16088 i0 39.7 0.674418604651163 58 34 66.3 1 258 88 367 424 XP_004037463.1 hypothetical protein IMG5_051550 [Ichthyophthirius multifiliis] diamond 174 46.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
30013127 30013127 PRJNA473641_P_NODE_2851_length_508_cov_2.581609_g2768_i0 PRJNA473641 2851 508 2.581609 13.11457372 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 96.7 5.36e-22   NR XP_001023601.1 312017 g2768 i0 77.4 0.720472440944882 62 13 36.6 1 241 56 89 149 XP_001023601.1 tubulin polymerization-promoting family protein [Tetrahymena thermophila SB210] diamond 366 96.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30597716 30597716 PRJNA473641_P_NODE_5153_length_401_cov_2.009146_g5070_i0 PRJNA473641 5153 401 2.009146 8.05667546 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 93.6 1.07e-21   NR CDW83169.1 5949 g5070 i0 45.8 1.54114713216958 107 58 80 0 362 42 9 115 CDW83169.1 UNKNOWN [Stylonychia lemnae] diamond 618 94.4 0.991525423728813 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30834468 30834468 PRJNA473641_P_NODE_21674_length_246_cov_0.890173_g21591_i0 PRJNA473641 21674 246 0.890173 2.18982558 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.98e-19   NR KRX00193.1 266149 g21591 i0 60.6 1.59756097560976 66 25 79.3 1 1 195 102 167 KRX00193.1 Zinc-binding ribosomal protein [Pseudocohnilembus persalinus] diamond 393 87.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
30992536 30992536 PRJNA473641_P_NODE_5934_length_380_cov_1.469055_g5851_i0 PRJNA473641 5934 380 1.469055 5.582409 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 192 3.38e-57   NR XP_001448309.1 5888 g5851 i0 87.5 33.1026315789474 104 13 82.1 0 68 379 258 361 XP_001448309.1 uncharacterized protein GSPATT00015771001 [Paramecium tetraurelia] diamond 12579 192 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
31103278 31103278 PRJNA473641_P_NODE_20835_length_247_cov_0.885057_g20752_i0 PRJNA473641 20835 247 0.885057 2.18609079 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 112 1.18e-26   NR AAG00568.1 5888 g20752 i0 79.1 12.2064777327935 67 14 81.4 0 3 203 407 473 AAG00568.1 heat shock protein 90, partial [Paramecium tetraurelia] diamond 3015 113 0.991150442477876 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
31483080 31483080 PRJNA473641_P_NODE_2256_length_560_cov_5.334702_g2174_i0 PRJNA473641 2256 560 5.334702 29.8743312 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 196 1.2e-60   NR XP_001025866.1 312017 g2174 i0 59.1 2.61964285714286 164 66 87.9 1 527 36 6 168 XP_001025866.1 translationally-controlled tumor-like protein [Tetrahymena thermophila SB210] diamond 1467 197 0.99492385786802 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31498465 31498465 PRJNA473641_P_NODE_24636_length_242_cov_0.911243_g24553_i0 PRJNA473641 24636 242 0.911243 2.20520806 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 100 4.419999999999999e-23   NR XP_004030844.1 5932 g24553 i0 67.6 1.83471074380165 74 24 91.7 0 2 223 100 173 XP_004030844.1 hypothetical protein IMG5_152090 [Ichthyophthirius multifiliis] diamond 444 100 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31735696 31735696 PRJNA473641_P_NODE_737_length_886_cov_4.313653_g672_i0 PRJNA473641 737 886 4.313653 38.21896558 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 61.6 1.1e-6   NR CAD8044952.1 5886 g672 i0 39.7 0.85665914221219 63 36 21.3 1 47 235 132 192 CAD8044952.1 unnamed protein product [Paramecium primaurelia] diamond 759 61.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
32131171 32131171 PRJNA473641_P_NODE_19998_length_248_cov_0.880000_g19915_i0 PRJNA473641 19998 248 0.88 2.1824 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 58.2 1.22e-7   NR XP_004027169.1 5932 g19915 i0 68.8 0.786290322580645 32 10 38.7 0 123 218 39 70 XP_004027169.1 hypothetical protein IMG5_188500 [Ichthyophthirius multifiliis] diamond 195 58.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
32257907 32257907 PRJNA473641_P_NODE_10338_length_312_cov_1.221757_g10255_i0 PRJNA473641 10338 312 1.221757 3.81188184 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 59.7 8.38e-8   NR KRW99699.1 266149 g10255 i0 65.9 0.423076923076923 44 15 42.3 0 59 190 294 337 KRW99699.1 hypothetical protein PPERSA_03500 [Pseudocohnilembus persalinus] diamond 132 59.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;