RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473641", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473641 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4923617 4923617 PRJNA473641_P_NODE_17684_length_251_cov_0.865169_g17601_i0 PRJNA473641 17684 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 464 2.47e-126   NTclustered gi|1226876681|gb|CP022559.1| 197 g17601 i0 100 102 251 0 100 0 1 251 699824 699574 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 25602 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29807953 29807953 PRJNA473641_P_NODE_20311_length_247_cov_1.344828_g20228_i0 PRJNA473641 20311 247 1.344828 3.32172516 Campylobacter 194 Bacteria Bacteria 61.6 1.29e-9   NR WP_104151257.1 198 g20228 i0 51.9 8.8421052631579 52 25 63.2 0 37 192 19 70 WP_104151257.1 thermonuclease family protein [Campylobacter hyointestinalis] diamond 2184 61.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;