RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA473641", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473641 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27155158 27155158 PRJNA473641_P_NODE_5422_length_394_cov_1.205607_g5339_i0 PRJNA473641 5422 394 1.205607 4.75009158 Bryobacter 911113 Bacteria Bacteria 176 2.75e-53   NR MCU0247586.1 1962911 g5339 i0 70.5 8.35279187817259 122 36 92.9 0 6 371 77 198 MCU0247586.1 HpcH/HpaI aldolase/citrate lyase family protein [Bryobacter sp.] diamond 3291 176 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Bryobacter Bryobacter sp.
27170815 27170815 PRJNA473641_P_NODE_19642_length_248_cov_0.880000_g19559_i0 PRJNA473641 19642 248 0.88 2.1824 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 54.3 3.11e-6   NR HTT24175.1 2771375 g19559 i0 39.2 3.61693548387097 79 46 93.1 1 6 236 265 343 HTT24175.1 zinc-binding dehydrogenase [Candidatus Sulfotelmatobacter sp.] diamond 897 54.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.
28023823 28023823 PRJNA473641_P_NODE_2825_length_510_cov_1.466819_g2742_i0 PRJNA473641 2825 510 1.466819 7.4807769 Bryobacterales bacterium 2026791 Bacteria Bacteria 249 3.7400000000000005e-80   NR MSV28683.1 2026791 g2742 i0 75.2 12.9117647058824 157 39 92.4 0 477 7 1 157 MSV28683.1 hypothetical protein [Bryobacterales bacterium] diamond 6585 249 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
31830566 31830566 PRJNA473641_P_NODE_15837_length_261_cov_0.867021_g15754_i0 PRJNA473641 15837 261 0.867021 2.26292481 PVC group 1783257 Bacteria Bacteria 132 7.37e-36   NR WP_031498959.1 360054 g15754 i0 72.1 11.8275862068966 86 24 98.9 0 2 259 178 263 WP_031498959.1 HpcH/HpaI aldolase family protein [Bryobacter aggregatus] diamond 3087 132 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Bryobacter Bryobacter aggregatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;