RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA473641", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA473641 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29475858 29475858 PRJNA473641_P_NODE_9750_length_318_cov_2.979592_g9667_i0 PRJNA473641 9750 318 2.979592 9.47510256 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 46.2 9.91e-4   NR CBX28568.1 201089 g9667 i0 43.3 1.16981132075472 60 32 54.7 1 223 50 26 85 CBX28568.1 hypothetical protein N47_G38920 [uncultured Desulfobacterium sp.] diamond 372 46.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.
31371958 31371958 PRJNA473641_P_NODE_21456_length_246_cov_0.890173_g21373_i0 PRJNA473641 21456 246 0.890173 2.18982558 Candidatus Magnetomorum sp. HK-1 1509431 Bacteria Bacteria 43.1 0.0303   NR KPA13394.1 1509431 g21373 i0 31.8 0.804878048780488 66 40 75.6 2 240 55 1922 1986 KPA13394.1 Concanavalin A-like lectin/glucanase [Candidatus Magnetomorum sp. HK-1] diamond 198 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Candidatus Magnetomoraceae Candidatus Magnetomorum Candidatus Magnetomorum sp. HK-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;