RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA473641" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 4 ✖

bioproject 1

  • PRJNA473641 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6198613 6198613 PRJNA473641_P_NODE_26225_length_237_cov_2.439024_g26142_i0 PRJNA473641 26225 237 2.439024 5.78048688 root 1 Root_unresolved Root_unresolved 438 1.4e-118   NTclustered gi|15485521|emb|AJ293908.1| 10515 g26142 i0 100 99.9662447257384 237 0 100 0 1 237 1327 1091 Human adenovirus type 2 penton gene, isolate 352 blastn 23692 438 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
10023748 10023748 PRJNA473641_P_NODE_15968_length_259_cov_2.064516_g15885_i0 PRJNA473641 15968 259 2.064516 5.34709644 root 1 Root_unresolved Root_unresolved 296 9.87e-76   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g15885 i0 96.648 103.328185328185 179 4 97 2 10 186 16393 16215 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 26762 298 0.993288590604027 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
21497316 21497316 PRJNA473641_P_NODE_3297_length_479_cov_1.270936_g3214_i0 PRJNA473641 3297 479 1.270936 6.08778344 root 1 Root_unresolved Root_unresolved 865 0   NTclustered gi|2620236085|gb|OR777220.1| 10515 g3214 i0 99.372 99.7933194154488 478 2 99 1 3 479 16079 15602 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 47801 865 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
24047435 24047435 PRJNA473641_P_NODE_819_length_852_cov_2.568678_g752_i0 PRJNA473641 819 852 2.568678 21.88513656 root 1 Root_unresolved Root_unresolved 1555 0   NTclustered gi|2620236085|gb|OR777220.1| 10515 g752 i0 99.648 100 852 2 100 1 1 852 16820 17670 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 85200 1555 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;