RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473641", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA473641 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10648563 10648563 PRJNA473641_P_NODE_11329_length_302_cov_1.344978_g11246_i0 PRJNA473641 11329 302 1.344978 4.06183356 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 112 3.95e-29   NR XP_028876282.1 857276 g11246 i0 61.7 5.58278145695364 94 36 93.4 0 20 301 3 96 XP_028876282.1 histone H4 [Cryptosporidium ubiquitum] diamond 1686 112 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
20846823 20846823 PRJNA473641_P_NODE_4237_length_434_cov_3.155125_g4154_i0 PRJNA473641 4237 434 3.155125 13.6932425 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|914998613|ref|XM_013392164.1| 5801 g4154 i0 91.111 0.175115207373272 45 0 10 3 71 112 121 164 Eimeria acervulina hypothetical protein partial mRNA blastn 76 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
30250566 30250566 PRJNA473641_P_NODE_12732_length_288_cov_1.093023_g12649_i0 PRJNA473641 12732 288 1.093023 3.14790624 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.8 6.52e-19   NR XP_013337611.1 5804 g12649 i0 54.9 6.71875 82 36 84.4 1 245 3 36 117 XP_013337611.1 ran-specific GTPase-activating protein, putative [Eimeria maxima] diamond 1935 88.6 0.99097065462754 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;