RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473201", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA473201 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6198561 6198561 PRJNA473201_P_NODE_88245_length_204_cov_22.244275_g87503_i0 PRJNA473201 88245 204 22.244275 45.378321 Borreliella 64895 Bacteria Bacteria 52.8 0.018   NTclustered gi|2591852179|gb|CP132457.1| 42109 g87503 i0 100 2.74509803921569 28 0 14 0 3 30 2809 2782 Borreliella andersonii strain 21038 chromosome, complete genome blastn 560 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella andersonii
14472485 14472485 PRJNA473201_P_NODE_42232_length_310_cov_23.755274_g41490_i0 PRJNA473201 42232 310 23.755274 73.6413494 Leptospira kmetyi 408139 Bacteria Bacteria 54.7 0.008   NTclustered gi|1511924597|gb|CP033614.1| 408139 g41490 i0 87.5 0.154838709677419 48 5 15 1 252 299 1659212 1659258 Leptospira kmetyi strain LS 001/16 chromosome 1, complete sequence blastn 48 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira kmetyi
31814582 31814582 PRJNA473201_P_NODE_76317_length_246_cov_0.890173_g75575_i0 PRJNA473201 76317 246 0.890173 2.18982558 Leptospiraceae bacterium 2026757 Bacteria Bacteria 44.7 0.00816   NR MCB1141074.1 2026757 g75575 i0 37.3 0.817073170731707 67 39 81.7 1 236 36 237 300 MCB1141074.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase [Leptospiraceae bacterium] diamond 201 44.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;